NTDB

Overview

Name	comP	Type	Machinery gene
Locus tag	M0D45_RS05660	Genome accession	NZ_CP096139
Coordinates	1372349..1372762 (+)	Length	137 a.a.
NCBI ID	WP_260817743.1	Uniprot ID	-
Organism	Xanthomonas prunicola strain MAI5069
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1367349..1377762

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M0D45_RS05635 (M0D45_05625)	pilB	1367380..1369116 (-)	1737	WP_260817739.1	type IV-A pilus assembly ATPase PilB	Machinery gene
M0D45_RS05640 (M0D45_05630)	-	1369209..1369817 (-)	609	WP_260817740.1	methionine biosynthesis protein MetW	-
M0D45_RS05645 (M0D45_05635)	-	1369810..1370844 (-)	1035	WP_260818124.1	glycosyltransferase	-
M0D45_RS05650 (M0D45_05640)	-	1370847..1371644 (-)	798	WP_260817741.1	glycosyltransferase family A protein	-
M0D45_RS05655 (M0D45_05645)	-	1371646..1372026 (-)	381	WP_260817742.1	SMR family transporter	-
M0D45_RS05660 (M0D45_05650)	comP	1372349..1372762 (+)	414	WP_260817743.1	pilin	Machinery gene
M0D45_RS05665 (M0D45_05655)	-	1372830..1374791 (+)	1962	WP_260817744.1	hypothetical protein	-
M0D45_RS05670 (M0D45_05660)	pilC	1374903..1376165 (+)	1263	WP_313905405.1	type II secretion system F family protein	Machinery gene
M0D45_RS05675 (M0D45_05665)	-	1376172..1377035 (+)	864	WP_260817745.1	A24 family peptidase	-
M0D45_RS05680 (M0D45_05670)	coaE	1377049..1377675 (+)	627	WP_260817746.1	dephospho-CoA kinase	-

Sequence

Protein

Download Length: 137 a.a. Molecular weight: 13985.94 Da Isoelectric Point: 8.4765

                                >NTDB_id=679618 M0D45_RS05660 WP_260817743.1 1372349..1372762(+) (comP) [Xanthomonas prunicola strain MAI5069]

MKKNAQGFTLIELMIVIAIIAILAAIALPAYSDYTKKAKVSEVVLAASSGRTTISEYVAANNGNCPSSGVLESQSSTYVS

GVSNSGCVITAVSAVSGATGNIILTGTVNPSTFQVDWTCGGSVQAKYRPGSCQGTKQ

Nucleotide

Download Length: 414 bp

                                >NTDB_id=679618 M0D45_RS05660 WP_260817743.1 1372349..1372762(+) (comP) [Xanthomonas prunicola strain MAI5069]

ATGAAGAAGAATGCACAGGGCTTCACCCTGATCGAACTGATGATCGTGATCGCCATCATCGCCATCCTGGCCGCCATTGC

GCTGCCGGCCTATTCGGACTACACCAAGAAGGCCAAGGTCTCGGAAGTCGTGCTGGCCGCTTCGTCGGGCCGCACCACCA

TTTCGGAGTATGTCGCTGCGAATAATGGCAACTGCCCCAGCAGCGGCGTGCTTGAGAGCCAGTCGTCTACCTATGTTAGC

GGCGTCAGCAACAGCGGTTGCGTGATCACCGCCGTCAGCGCAGTATCTGGCGCGACCGGCAATATCATCCTGACCGGCAC

GGTGAATCCGTCCACCTTCCAGGTCGACTGGACCTGCGGCGGCAGCGTGCAGGCCAAGTACCGCCCGGGTTCCTGCCAGG

GCACCAAGCAGTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(37-133)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-28)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comP	Acinetobacter baylyi ADP1	45.638	100	0.496
pilA	Ralstonia pseudosolanacearum GMI1000	34.756	100	0.416
pilA2	Legionella pneumophila strain ERS1305867	42.857	97.08	0.416
pilA2	Legionella pneumophila str. Paris	42.105	97.08	0.409
pilA/pilAII	Pseudomonas stutzeri DSM 10701	36.667	100	0.401
pilA/pilA1	Eikenella corrodens VA1	35.948	100	0.401
pilA/pilAI	Pseudomonas stutzeri DSM 10701	37.931	100	0.401
pilE	Neisseria gonorrhoeae MS11	42.188	93.431	0.394
pilE	Neisseria gonorrhoeae strain FA1090	42.52	92.701	0.394
pilA	Haemophilus influenzae 86-028NP	40	98.54	0.394
pilA	Acinetobacter baumannii strain A118	37.762	100	0.394

Detailed information NTG0679618