Detailed information NTG0679619

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: M0D45_RS05670
• Genome accession: NZ_CP096139
• Coordinates: 1374903..1376165 (+)
• Length: 420 a.a.
• NCBI ID: WP_313905405.1
• Uniprot ID: -
• Organism: Xanthomonas prunicola strain MAI5069
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1369903..1381165

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M0D45_RS05650 (M0D45_05640)	-	1370847..1371644 (-)	798	WP_260817741.1	glycosyltransferase family A protein	-
M0D45_RS05655 (M0D45_05645)	-	1371646..1372026 (-)	381	WP_260817742.1	SMR family transporter	-
M0D45_RS05660 (M0D45_05650)	comP	1372349..1372762 (+)	414	WP_260817743.1	pilin	Machinery gene
M0D45_RS05665 (M0D45_05655)	-	1372830..1374791 (+)	1962	WP_260817744.1	hypothetical protein	-
M0D45_RS05670 (M0D45_05660)	pilC	1374903..1376165 (+)	1263	WP_313905405.1	type II secretion system F family protein	Machinery gene
M0D45_RS05675 (M0D45_05665)	-	1376172..1377035 (+)	864	WP_260817745.1	A24 family peptidase	-
M0D45_RS05680 (M0D45_05670)	coaE	1377049..1377675 (+)	627	WP_260817746.1	dephospho-CoA kinase	-

Sequence

Protein

• Length: 420 a.a.
• Molecular weight: 45834.40 Da
• Isoelectric Point: 10.3435

>NTDB_id=679619 M0D45_RS05670 WP_313905405.1 1374903..1376165(+) (pilC) [Xanthomonas prunicola strain MAI5069]
MSALGSTVKKGAKPANRVNAMTSFVWEGTDKRGVKMKGDELARNANMLRAELRRRGINPTVVKTKPKPLFGAAGKPIKPK
DIAFFSRQIATMMKSGVPMVGTLEIIGEGSKNPRMRKMVGEIRTDIEGGSSLSEAISKHPVQFDELYRNLVRAGESAGVL
DTVLDTVATYKENIEALKGKIKKALFYPAMVMAVALIVSSILLIWVVPQFETVFSSFGAELPAFTQMIVNLSRFMVSWWF
PILLVIIGSAVGLIMAYKRSPKMQHLFDRLILKVPVIGKIMHDSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYE
EAVLRMRDDVSVGYPVNLSMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMIFIGTI
VGGMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1263 bp

>NTDB_id=679619 M0D45_RS05670 WP_313905405.1 1374903..1376165(+) (pilC) [Xanthomonas prunicola strain MAI5069]
ATGTCAGCACTGGGCAGCACTGTGAAAAAGGGGGCTAAACCGGCCAATCGTGTGAACGCGATGACGTCGTTCGTCTGGGA
GGGGACAGACAAGCGCGGCGTCAAAATGAAGGGAGACGAGTTGGCTCGCAATGCGAACATGCTGCGCGCCGAACTTCGCC
GTAGGGGAATCAATCCCACTGTTGTCAAGACAAAACCCAAACCACTGTTTGGGGCGGCCGGCAAGCCGATCAAACCAAAA
GACATCGCATTTTTCAGTCGCCAGATTGCGACCATGATGAAATCCGGCGTCCCGATGGTCGGCACGTTGGAAATCATAGG
CGAGGGTTCCAAAAACCCCCGCATGCGAAAGATGGTTGGCGAAATTCGTACTGACATCGAAGGCGGATCGTCGCTCAGTG
AGGCGATCAGCAAACATCCGGTACAGTTTGACGAACTCTATCGCAACCTGGTCCGGGCTGGCGAAAGTGCCGGCGTCCTG
GACACGGTGCTGGATACAGTAGCGACCTACAAGGAAAATATCGAAGCACTGAAGGGCAAGATCAAGAAAGCGCTCTTTTA
TCCTGCGATGGTAATGGCCGTAGCGTTGATCGTCAGTTCCATATTGCTGATCTGGGTGGTACCGCAGTTCGAGACGGTAT
TCTCCAGCTTCGGTGCTGAATTGCCTGCATTCACCCAGATGATCGTGAATCTTTCGCGATTCATGGTTTCGTGGTGGTTC
CCGATCCTGCTGGTGATCATTGGGTCGGCGGTGGGGCTGATCATGGCCTACAAGCGCTCGCCCAAGATGCAACATCTGTT
TGATCGTCTAATTCTGAAAGTGCCAGTCATTGGCAAGATCATGCATGACAGTTCGATTGCCCGATTCGCACGGACGACCG
CGGTCACTTTCAAGGCAGGCGTTCCATTGGTCGAAGCCTTGGGAATCGTCGCGGGCGCGACGGGTAACAAGGTCTACGAG
GAAGCAGTTCTGCGGATGCGCGACGACGTCTCCGTAGGCTACCCAGTCAATCTGTCGATGAAGCAGGTCAACCTGTTTCC
TCACATGGTGATTCAGATGACGGCGATCGGTGAAGAGGCCGGCGCACTGGATGCCATGCTGTTCAAGGTTGCAGAATACT
TCGAGCAGGAAGTCAACAATGCCGTCGATGCACTGAGCAGCCTGCTTGAGCCTATGATCATGATCTTTATCGGCACCATC
GTCGGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (289-411)

• Type II secretion system (T2SS), protein F (T2SSF) (85-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	54.293	94.286	0.512
pilC	Acinetobacter baylyi ADP1	50.369	96.905	0.488
pilC	Legionella pneumophila strain ERS1305867	51.378	95	0.488
pilC	Acinetobacter baumannii D1279779	48.642	96.429	0.469
pilG	Neisseria meningitidis 44/76-A	43.424	95.952	0.417
pilG	Neisseria gonorrhoeae MS11	42.893	95.476	0.41
pilC	Vibrio cholerae strain A1552	39.409	96.667	0.381
pilC	Vibrio campbellii strain DS40M4	39.25	95.238	0.374
pilC	Thermus thermophilus HB27	38.861	96.19	0.374