Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   MYF86_RS17550 Genome accession   NZ_CP095841
Coordinates   3836563..3837702 (+) Length   379 a.a.
NCBI ID   WP_151287234.1    Uniprot ID   -
Organism   Aeromonas veronii strain AV040     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3831563..3842702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYF86_RS17520 (MYF86_17520) - 3831784..3832848 (+) 1065 WP_213386391.1 3-deoxy-7-phosphoheptulonate synthase -
  MYF86_RS17525 (MYF86_17525) aac(6') 3832855..3833313 (+) 459 WP_139464053.1 aminoglycoside 6'-N-acetyltransferase -
  MYF86_RS17530 (MYF86_17530) - 3833336..3834133 (-) 798 WP_216963807.1 ATP-binding cassette domain-containing protein -
  MYF86_RS17535 (MYF86_17535) btuC 3834199..3835206 (-) 1008 WP_216961918.1 vitamin B12 ABC transporter permease BtuC -
  MYF86_RS17540 (MYF86_17540) - 3835304..3836035 (-) 732 WP_216961916.1 transporter substrate-binding domain-containing protein -
  MYF86_RS17545 (MYF86_17545) - 3836148..3836504 (+) 357 WP_005353120.1 DMT family protein -
  MYF86_RS17550 (MYF86_17550) pilU 3836563..3837702 (+) 1140 WP_151287234.1 type IVa pilus ATPase TapW Machinery gene
  MYF86_RS17555 (MYF86_17555) - 3837796..3838245 (-) 450 WP_069529813.1 isoprenylcysteine carboxylmethyltransferase family protein -
  MYF86_RS17560 (MYF86_17560) alr 3838419..3839645 (+) 1227 WP_167569538.1 alanine racemase -
  MYF86_RS17565 (MYF86_17565) - 3839711..3840655 (-) 945 WP_236356304.1 TerC family protein -
  MYF86_RS17570 (MYF86_17570) oppF 3840958..3841953 (-) 996 WP_005337666.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 42253.34 Da        Isoelectric Point: 6.6011

>NTDB_id=678706 MYF86_RS17550 WP_151287234.1 3836563..3837702(+) (pilU) [Aeromonas veronii strain AV040]
MELRDMLQILAKQDGSDLYLSTGAPPCAKFNGGLRPLNETPLEPGEVARIAAEIMDGEQKQQFEKELEMNLAISLPQIGR
FRVNIFKQRNEVSLVARNIKTDIPRFEDLKLPPVLLDTIMEKRGLVLFVGGTGSGKSTSLAALIDHRNRNSGGHIITIED
PVEFVHRHRKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFSETGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLKAFVSQRLVKTTDGGRRAAVEIMLGTHTIRDMIKRGEFGGLKEVMEKSKALGMVTFDSAL
FDLVVEGVIEEEEAVKNADSANNLRLKIKLWKEKGQIASSSDATGWSLEPTKDEKGDFF

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=678706 MYF86_RS17550 WP_151287234.1 3836563..3837702(+) (pilU) [Aeromonas veronii strain AV040]
ATGGAATTGCGAGACATGTTACAGATCCTGGCTAAGCAGGATGGCTCAGACCTCTATCTGTCGACCGGCGCGCCCCCCTG
CGCCAAATTTAACGGCGGCCTGCGCCCCCTCAACGAAACGCCGCTGGAACCGGGTGAAGTGGCGCGGATCGCCGCCGAGA
TCATGGATGGCGAGCAGAAGCAGCAGTTCGAGAAGGAGTTGGAGATGAACCTCGCCATCTCCCTGCCCCAGATCGGCCGC
TTTCGGGTCAACATCTTCAAGCAGCGCAACGAAGTCTCTCTGGTGGCGCGCAACATCAAGACCGACATCCCCCGCTTTGA
AGATCTCAAACTCCCGCCTGTGCTGCTCGACACCATCATGGAGAAACGTGGCCTGGTGCTGTTTGTCGGCGGTACCGGCT
CGGGCAAGTCCACCTCGCTCGCGGCCCTCATCGACCATCGCAACCGCAACAGCGGCGGCCACATCATCACCATCGAGGAT
CCGGTGGAGTTCGTGCATCGCCATCGCAAGAGCATCATCAACCAGCGGGAAGTGGGCGTGGATACCCGCAGCTTCCATGC
GGCCCTGAAAAACACCCTGCGTCAGGCGCCAGACGTCATTCTTATCGGCGAGATCCGTGATCGCGAGACCATGGAACATG
CGCTGGCCTTCTCCGAAACCGGCCACCTTGCCATCTCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGATCGCATC
ATCAACTTCTTCCCGGAAGAGCGCCGCCCACAGCTGCTCAACGATCTGGGCAACAACCTCAAGGCCTTTGTCTCTCAGCG
GCTGGTGAAAACCACCGATGGCGGCCGCCGGGCCGCAGTGGAGATCATGCTCGGCACCCACACCATCCGCGACATGATCA
AGCGCGGCGAATTTGGCGGCCTCAAAGAGGTGATGGAAAAATCCAAGGCCCTCGGCATGGTTACCTTCGACAGTGCCCTG
TTTGATCTGGTGGTGGAAGGGGTGATTGAGGAAGAAGAGGCGGTGAAAAACGCCGACTCGGCCAACAACCTGCGCCTCAA
GATCAAGTTGTGGAAGGAGAAGGGGCAGATTGCCAGCAGCAGCGATGCCACCGGCTGGAGCCTCGAACCCACCAAGGACG
AGAAGGGCGATTTTTTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(114-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

54.474

100

0.546
  pilU Acinetobacter baylyi ADP1

53.239

93.668

0.499
  pilU Vibrio cholerae strain A1552

50.286

92.348

0.464
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.888

89.446

0.375
  pilT Pseudomonas aeruginosa PAK

41.279

90.765

0.375
  pilT Legionella pneumophila strain ERS1305867

42.216

88.127

0.372
  pilT Legionella pneumophila strain Lp02

42.216

88.127

0.372
  pilT Pseudomonas stutzeri DSM 10701

40.698

90.765

0.369
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

41.742

87.863

0.367
  pilT Vibrio cholerae strain A1552

41.742

87.863

0.367
  pilT Acinetobacter baumannii D1279779

41.617

88.127

0.367
  pilT Acinetobacter baumannii strain A118

41.617

88.127

0.367
  pilT Acinetobacter nosocomialis M2

41.617

88.127

0.367