Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   NALG_RS10420 Genome accession   NZ_AP017373
Coordinates   781635..781976 (-) Length   113 a.a.
NCBI ID   WP_286210757.1    Uniprot ID   -
Organism   Lactococcus formosensis strain 122061     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 776635..786976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NALG_RS03800 (NALG_0793) atpA 776889..778397 (-) 1509 WP_004259170.1 F0F1 ATP synthase subunit alpha -
  NALG_RS03805 (NALG_0794) - 778463..778990 (-) 528 WP_017368855.1 F0F1 ATP synthase subunit delta -
  NALG_RS03810 (NALG_0795) atpF 779005..779511 (-) 507 WP_017368854.1 F0F1 ATP synthase subunit B -
  NALG_RS03815 (NALG_0796) atpB 779525..780238 (-) 714 WP_017368853.1 F0F1 ATP synthase subunit A -
  NALG_RS03820 (NALG_0797) - 780293..780508 (-) 216 WP_003135074.1 F0F1 ATP synthase subunit C -
  NALG_RS03825 (NALG_0798) - 780704..781480 (-) 777 WP_185767510.1 alpha/beta hydrolase family protein -
  NALG_RS10420 (NALG_0799) comEC 781635..781976 (-) 342 WP_286210757.1 MBL fold metallo-hydrolase Machinery gene
  NALG_RS10425 (NALG_0800) comEC 781977..782381 (-) 405 WP_286210756.1 MBL fold metallo-hydrolase Machinery gene
  NALG_RS03830 (NALG_0801) - 782348..783844 (-) 1497 WP_286210755.1 ComEC/Rec2 family competence protein -
  NALG_RS03835 (NALG_0802) - 783864..784505 (-) 642 WP_096368624.1 helix-hairpin-helix domain-containing protein -
  NALG_RS03840 (NALG_0803) - 784563..785738 (-) 1176 WP_096368625.1 SLC13 family permease -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12846.78 Da        Isoelectric Point: 10.2217

>NTDB_id=67835 NALG_RS10420 WP_286210757.1 781635..781976(-) (comEC) [Lactococcus formosensis strain 122061]
MTFGEFYGKKFLFTGDLEEEGEAKLQKGYPHLEVDILKVGHHGSKTSTKEGFLEAIKPKIALISAGKNNRYKHPSQETLH
QLTARGIKIYRTDQQGAIRLLYKKGSWQIQTVK

Nucleotide


Download         Length: 342 bp        

>NTDB_id=67835 NALG_RS10420 WP_286210757.1 781635..781976(-) (comEC) [Lactococcus formosensis strain 122061]
GTGACATTTGGTGAATTTTATGGGAAGAAATTTCTTTTTACAGGTGACTTAGAAGAAGAGGGAGAGGCTAAACTCCAGAA
AGGATATCCACATTTAGAGGTTGATATCCTAAAAGTTGGACATCACGGCAGTAAGACTTCTACAAAGGAAGGTTTTTTAG
AAGCGATTAAGCCTAAGATTGCTCTTATTTCTGCTGGAAAAAATAATCGATATAAACATCCGAGTCAAGAGACGCTTCAC
CAATTAACTGCACGAGGAATAAAAATTTATCGGACAGACCAGCAAGGAGCGATCCGTCTCCTATATAAAAAAGGCAGCTG
GCAAATTCAAACAGTAAAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

60.177

100

0.602
  comEC/celB Streptococcus mitis SK321

54.783

100

0.558
  comEC/celB Streptococcus mitis NCTC 12261

55.263

100

0.558
  comEC/celB Streptococcus pneumoniae Rx1

53.043

100

0.54
  comEC/celB Streptococcus pneumoniae D39

53.043

100

0.54
  comEC/celB Streptococcus pneumoniae R6

53.043

100

0.54
  comEC/celB Streptococcus pneumoniae TIGR4

53.043

100

0.54
  comEC Latilactobacillus sakei subsp. sakei 23K

49.524

92.92

0.46
  comEC Bacillus subtilis subsp. subtilis str. 168

51.546

85.841

0.442
  comEC Staphylococcus aureus MW2

46

88.496

0.407
  comEC Staphylococcus aureus N315

46

88.496

0.407
  comA/comEC Thermus thermophilus HB27

43.878

86.726

0.381
  comA/comEC Acinetobacter baylyi ADP1

42.857

86.726

0.372
  comA/comEC Acinetobacter baumannii strain A118

45.161

82.301

0.372
  comA/comEC Acinetobacter baumannii D1279779

45.161

82.301

0.372
  comA Neisseria gonorrhoeae MS11

39.252

94.69

0.372

Multiple sequence alignment