Detailed information NTG0067285

Bioinformatically predicted

Overview

• Name: comYC
• Type: Machinery gene
• Locus tag: SITYG_RS09110
• Genome accession: NZ_AP014880
• Coordinates: 1791258..1791575 (-)
• Length: 105 a.a.
• NCBI ID: WP_003075998.1
• Uniprot ID: A0AAE8G310
• Organism: Streptococcus intermedius strain TYG1620
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1786258..1796575

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SITYG_RS09080 (SITYG_17980)	-	1787587..1788786 (-)	1200	WP_009569506.1	acetate kinase	-
SITYG_RS09085 (SITYG_17990)	comYH	1788833..1789786 (-)	954	WP_096363205.1	class I SAM-dependent methyltransferase	Machinery gene
SITYG_RS09090 (SITYG_18000)	comGG	1789877..1790203 (-)	327	WP_020999196.1	competence type IV pilus minor pilin ComGG	-
SITYG_RS09095 (SITYG_18010)	comGF/cglF	1790184..1790621 (-)	438	WP_003073990.1	competence type IV pilus minor pilin ComGF	Machinery gene
SITYG_RS09100 (SITYG_18020)	comGE/cglE	1790605..1790898 (-)	294	WP_003073987.1	competence type IV pilus minor pilin ComGE	Machinery gene
SITYG_RS09105 (SITYG_18030)	comYD	1790870..1791298 (-)	429	WP_096363206.1	competence type IV pilus minor pilin ComGD	Machinery gene
SITYG_RS09110 (SITYG_18040)	comYC	1791258..1791575 (-)	318	WP_003075998.1	competence type IV pilus major pilin ComGC	Machinery gene
SITYG_RS09115 (SITYG_18050)	comYB	1791572..1792594 (-)	1023	WP_173672242.1	competence type IV pilus assembly protein ComGB	Machinery gene
SITYG_RS09120 (SITYG_18060)	comYA	1792536..1793477 (-)	942	WP_096363208.1	competence type IV pilus ATPase ComGA	Machinery gene
SITYG_RS09125 (SITYG_18070)	-	1793546..1793911 (-)	366	WP_009569514.1	DUF1033 family protein	-
SITYG_RS09130 (SITYG_18080)	-	1794040..1794756 (-)	717	WP_009569515.1	TipC family immunity protein	-
SITYG_RS10700 (SITYG_18090)	-	1794731..1796347 (-)	1617	WP_231870233.1	T7SS effector LXG polymorphic toxin	-

Sequence

Protein

• Length: 105 a.a.
• Molecular weight: 11666.77 Da
• Isoelectric Point: 10.1006

>NTDB_id=67285 SITYG_RS09110 WP_003075998.1 1791258..1791575(-) (comYC) [Streptococcus intermedius strain TYG1620]
MKKIKNLKVKAFTLVEMLVVLLIISVLMLLFVPNLTKQKEAVTEKGNAAVVKVVESQAELFEVNHSNEKATLSKLVTEGT
ITDKQAASYKAYYAKHTKETRSVAD

Nucleotide

• Length: 318 bp

>NTDB_id=67285 SITYG_RS09110 WP_003075998.1 1791258..1791575(-) (comYC) [Streptococcus intermedius strain TYG1620]
GTGAAAAAAATTAAAAATTTAAAGGTTAAAGCTTTTACTTTAGTGGAAATGTTGGTCGTGCTTTTAATTATTAGTGTTTT
AATGCTCTTATTTGTGCCGAATTTGACCAAGCAAAAGGAAGCAGTAACAGAAAAAGGAAATGCAGCTGTGGTCAAAGTTG
TAGAGAGCCAAGCGGAACTTTTTGAGGTCAATCATAGCAATGAAAAAGCAACGCTTTCAAAATTAGTCACTGAAGGCACG
ATTACAGATAAGCAGGCAGCGTCATATAAGGCTTACTATGCGAAACATACAAAAGAAACTCGTTCTGTTGCAGATTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (8-30)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYC	Streptococcus gordonii str. Challis substr. CH1	73.333	100	0.733
comYC	Streptococcus mutans UA140	68.571	100	0.686
comYC	Streptococcus mutans UA159	68.571	100	0.686
comGC/cglC	Streptococcus mitis NCTC 12261	68.627	97.143	0.667
comGC/cglC	Streptococcus mitis SK321	68.627	97.143	0.667
comGC/cglC	Streptococcus pneumoniae Rx1	66.667	97.143	0.648
comGC/cglC	Streptococcus pneumoniae D39	66.667	97.143	0.648
comGC/cglC	Streptococcus pneumoniae TIGR4	66.667	97.143	0.648
comGC/cglC	Streptococcus pneumoniae R6	66.667	97.143	0.648
comGC	Lactococcus lactis subsp. cremoris KW2	54.808	99.048	0.543
comYC	Streptococcus suis isolate S10	64.045	84.762	0.543