Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   SITYG_RS09105 Genome accession   NZ_AP014880
Coordinates   1790870..1791298 (-) Length   142 a.a.
NCBI ID   WP_096363206.1    Uniprot ID   A0AAD1C9E0
Organism   Streptococcus intermedius strain TYG1620     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1785870..1796298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS09080 (SITYG_17980) - 1787587..1788786 (-) 1200 WP_009569506.1 acetate kinase -
  SITYG_RS09085 (SITYG_17990) comYH 1788833..1789786 (-) 954 WP_096363205.1 class I SAM-dependent methyltransferase Machinery gene
  SITYG_RS09090 (SITYG_18000) comGG 1789877..1790203 (-) 327 WP_020999196.1 competence type IV pilus minor pilin ComGG -
  SITYG_RS09095 (SITYG_18010) comGF/cglF 1790184..1790621 (-) 438 WP_003073990.1 competence type IV pilus minor pilin ComGF Machinery gene
  SITYG_RS09100 (SITYG_18020) comGE/cglE 1790605..1790898 (-) 294 WP_003073987.1 competence type IV pilus minor pilin ComGE Machinery gene
  SITYG_RS09105 (SITYG_18030) comYD 1790870..1791298 (-) 429 WP_096363206.1 competence type IV pilus minor pilin ComGD Machinery gene
  SITYG_RS09110 (SITYG_18040) comYC 1791258..1791575 (-) 318 WP_003075998.1 competence type IV pilus major pilin ComGC Machinery gene
  SITYG_RS09115 (SITYG_18050) comYB 1791572..1792594 (-) 1023 WP_173672242.1 competence type IV pilus assembly protein ComGB Machinery gene
  SITYG_RS09120 (SITYG_18060) comYA 1792536..1793477 (-) 942 WP_096363208.1 competence type IV pilus ATPase ComGA Machinery gene
  SITYG_RS09125 (SITYG_18070) - 1793546..1793911 (-) 366 WP_009569514.1 DUF1033 family protein -
  SITYG_RS09130 (SITYG_18080) - 1794040..1794756 (-) 717 WP_009569515.1 TipC family immunity protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16262.86 Da        Isoelectric Point: 10.4613

>NTDB_id=67284 SITYG_RS09105 WP_096363206.1 1790870..1791298(-) (comYD) [Streptococcus intermedius strain TYG1620]
MRNIQKKLVLLQIKGFTILESLLTLFVASFLLLAVSGAVRSSFEQVEEQIFFLEFEHFYRESQKLSNASQRQLDMNFSRA
RISNGYNSLSIPRSVHAPDDLTLRFDKAGGNSSLGKIVFQTKRQTIMYQLYLGNGKFKKTIC

Nucleotide


Download         Length: 429 bp        

>NTDB_id=67284 SITYG_RS09105 WP_096363206.1 1790870..1791298(-) (comYD) [Streptococcus intermedius strain TYG1620]
ATGCGAAACATACAAAAGAAACTCGTTCTGTTGCAGATTAAGGGATTTACAATTTTGGAAAGTTTGCTGACTTTGTTTGT
AGCGAGTTTTTTATTACTTGCTGTGTCAGGGGCTGTCCGTTCCTCTTTTGAACAAGTGGAAGAGCAGATTTTCTTTCTTG
AGTTTGAGCATTTTTACCGAGAAAGTCAGAAGTTGAGTAATGCTAGTCAAAGGCAATTGGACATGAATTTTTCTCGTGCG
CGAATTTCTAATGGGTACAATTCTTTATCAATTCCTCGCTCGGTTCACGCTCCAGATGATTTAACACTTCGTTTTGATAA
GGCAGGTGGTAATTCCTCGCTTGGTAAGATTGTATTTCAGACGAAAAGACAGACAATTATGTATCAATTATATCTAGGAA
ATGGAAAATTTAAGAAAACAATATGTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus gordonii str. Challis substr. CH1

60.769

91.549

0.556
  comGD/cglD Streptococcus mitis NCTC 12261

55.814

90.845

0.507
  comGD/cglD Streptococcus mitis SK321

55.118

89.437

0.493
  comGD/cglD Streptococcus pneumoniae Rx1

55.118

89.437

0.493
  comGD/cglD Streptococcus pneumoniae D39

55.118

89.437

0.493
  comGD/cglD Streptococcus pneumoniae R6

55.118

89.437

0.493
  comGD/cglD Streptococcus pneumoniae TIGR4

54.331

89.437

0.486
  comYD Streptococcus mutans UA140

49.231

91.549

0.451
  comYD Streptococcus mutans UA159

49.231

91.549

0.451

Multiple sequence alignment