Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | SITYG_RS09085 | Genome accession | NZ_AP014880 |
| Coordinates | 1788833..1789786 (-) | Length | 317 a.a. |
| NCBI ID | WP_096363205.1 | Uniprot ID | A0AAD1FKK0 |
| Organism | Streptococcus intermedius strain TYG1620 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1783833..1794786
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SITYG_RS09055 (SITYG_17940) | - | 1784002..1784184 (-) | 183 | WP_009569502.1 | hypothetical protein | - |
| SITYG_RS09060 (SITYG_17950) | - | 1784181..1784573 (-) | 393 | WP_009569503.1 | DUF1310 family protein | - |
| SITYG_RS09070 (SITYG_17960) | - | 1784808..1785194 (-) | 387 | WP_009569504.1 | DUF1310 family protein | - |
| SITYG_RS09075 (SITYG_17970) | glmS | 1785391..1787205 (-) | 1815 | WP_009569505.1 | glutamine--fructose-6-phosphate transaminase (isomerizing) | - |
| SITYG_RS09080 (SITYG_17980) | - | 1787587..1788786 (-) | 1200 | WP_009569506.1 | acetate kinase | - |
| SITYG_RS09085 (SITYG_17990) | comYH | 1788833..1789786 (-) | 954 | WP_096363205.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SITYG_RS09090 (SITYG_18000) | comGG | 1789877..1790203 (-) | 327 | WP_020999196.1 | competence type IV pilus minor pilin ComGG | - |
| SITYG_RS09095 (SITYG_18010) | comGF/cglF | 1790184..1790621 (-) | 438 | WP_003073990.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SITYG_RS09100 (SITYG_18020) | comGE/cglE | 1790605..1790898 (-) | 294 | WP_003073987.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| SITYG_RS09105 (SITYG_18030) | comYD | 1790870..1791298 (-) | 429 | WP_096363206.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| SITYG_RS09110 (SITYG_18040) | comYC | 1791258..1791575 (-) | 318 | WP_003075998.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SITYG_RS09115 (SITYG_18050) | comYB | 1791572..1792594 (-) | 1023 | WP_173672242.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SITYG_RS09120 (SITYG_18060) | comYA | 1792536..1793477 (-) | 942 | WP_096363208.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SITYG_RS09125 (SITYG_18070) | - | 1793546..1793911 (-) | 366 | WP_009569514.1 | DUF1033 family protein | - |
| SITYG_RS09130 (SITYG_18080) | - | 1794040..1794756 (-) | 717 | WP_009569515.1 | TipC family immunity protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35985.02 Da Isoelectric Point: 4.5711
>NTDB_id=67281 SITYG_RS09085 WP_096363205.1 1788833..1789786(-) (comYH) [Streptococcus intermedius strain TYG1620]
MNFEKIEQAYTLLLENIQEIQNALLTNFYDALVEQNGIYLDGKTELAIVKKNNEILNSLKLSKEEWRRSYQFLLMKAAQT
EPLQANHQFTPDSIGFIVTFLIDQLSNKEHIDVLEIGSGMGNLAETVLNNTKKNVDYLGLELDDLLIDVSASIADVMDAK
VSFVQGDAVRPQVLKESDVIVSDLPIGYYPDDHIASRYEVASTQEHTYAHHLLMEQSLKYLKPGGYAIFLAPNNLLTSRQ
SQLLKNWLQKYVQIVAMIALPESLFGNAAYAKTIFVLKKQDEQAIQPFVYALSDLQNQAALLTFSEKFQNWRQESEI
MNFEKIEQAYTLLLENIQEIQNALLTNFYDALVEQNGIYLDGKTELAIVKKNNEILNSLKLSKEEWRRSYQFLLMKAAQT
EPLQANHQFTPDSIGFIVTFLIDQLSNKEHIDVLEIGSGMGNLAETVLNNTKKNVDYLGLELDDLLIDVSASIADVMDAK
VSFVQGDAVRPQVLKESDVIVSDLPIGYYPDDHIASRYEVASTQEHTYAHHLLMEQSLKYLKPGGYAIFLAPNNLLTSRQ
SQLLKNWLQKYVQIVAMIALPESLFGNAAYAKTIFVLKKQDEQAIQPFVYALSDLQNQAALLTFSEKFQNWRQESEI
Nucleotide
Download Length: 954 bp
>NTDB_id=67281 SITYG_RS09085 WP_096363205.1 1788833..1789786(-) (comYH) [Streptococcus intermedius strain TYG1620]
ATGAATTTTGAAAAAATTGAACAGGCCTATACACTCCTGTTAGAAAATATCCAAGAAATCCAAAATGCTCTTTTAACGAA
TTTTTATGATGCCTTGGTAGAGCAAAACGGGATTTATCTGGATGGAAAGACAGAGCTAGCCATTGTCAAAAAAAATAATG
AAATACTAAACTCTTTGAAATTAAGTAAAGAAGAATGGCGCAGGAGCTACCAATTTTTACTGATGAAGGCAGCCCAAACG
GAGCCTTTGCAAGCCAATCATCAATTTACTCCGGATTCTATTGGTTTTATCGTAACATTTCTCATTGACCAATTGAGTAA
TAAAGAACATATTGATGTTTTGGAAATTGGTAGCGGAATGGGGAATTTAGCAGAGACCGTTCTCAATAATACAAAGAAAA
ATGTGGATTACCTAGGACTAGAATTGGACGATTTGTTAATTGATGTATCAGCTAGCATAGCAGATGTGATGGATGCAAAG
GTTAGTTTTGTACAAGGTGATGCAGTGCGCCCACAAGTATTAAAAGAAAGTGATGTGATTGTTAGCGATTTGCCGATTGG
CTATTATCCGGATGATCACATTGCATCGCGCTATGAAGTGGCTAGTACGCAAGAGCATACCTATGCCCATCATTTGTTAA
TGGAACAATCGCTCAAGTATCTGAAACCAGGCGGTTATGCGATATTTCTTGCGCCAAATAATTTATTAACTAGTAGGCAG
AGTCAATTATTGAAAAATTGGTTGCAAAAGTATGTTCAGATAGTTGCAATGATTGCGTTGCCGGAATCCCTTTTTGGAAA
TGCAGCGTATGCCAAAACAATTTTTGTGCTCAAAAAGCAAGACGAACAAGCTATTCAGCCATTTGTTTATGCTTTGTCTG
ATTTACAAAATCAAGCTGCCTTATTGACTTTTAGCGAAAAATTCCAAAATTGGAGGCAAGAAAGTGAAATTTAA
ATGAATTTTGAAAAAATTGAACAGGCCTATACACTCCTGTTAGAAAATATCCAAGAAATCCAAAATGCTCTTTTAACGAA
TTTTTATGATGCCTTGGTAGAGCAAAACGGGATTTATCTGGATGGAAAGACAGAGCTAGCCATTGTCAAAAAAAATAATG
AAATACTAAACTCTTTGAAATTAAGTAAAGAAGAATGGCGCAGGAGCTACCAATTTTTACTGATGAAGGCAGCCCAAACG
GAGCCTTTGCAAGCCAATCATCAATTTACTCCGGATTCTATTGGTTTTATCGTAACATTTCTCATTGACCAATTGAGTAA
TAAAGAACATATTGATGTTTTGGAAATTGGTAGCGGAATGGGGAATTTAGCAGAGACCGTTCTCAATAATACAAAGAAAA
ATGTGGATTACCTAGGACTAGAATTGGACGATTTGTTAATTGATGTATCAGCTAGCATAGCAGATGTGATGGATGCAAAG
GTTAGTTTTGTACAAGGTGATGCAGTGCGCCCACAAGTATTAAAAGAAAGTGATGTGATTGTTAGCGATTTGCCGATTGG
CTATTATCCGGATGATCACATTGCATCGCGCTATGAAGTGGCTAGTACGCAAGAGCATACCTATGCCCATCATTTGTTAA
TGGAACAATCGCTCAAGTATCTGAAACCAGGCGGTTATGCGATATTTCTTGCGCCAAATAATTTATTAACTAGTAGGCAG
AGTCAATTATTGAAAAATTGGTTGCAAAAGTATGTTCAGATAGTTGCAATGATTGCGTTGCCGGAATCCCTTTTTGGAAA
TGCAGCGTATGCCAAAACAATTTTTGTGCTCAAAAAGCAAGACGAACAAGCTATTCAGCCATTTGTTTATGCTTTGTCTG
ATTTACAAAATCAAGCTGCCTTATTGACTTTTAGCGAAAAATTCCAAAATTGGAGGCAAGAAAGTGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
60 |
99.369 |
0.596 |
| comYH | Streptococcus mutans UA159 |
59.683 |
99.369 |
0.593 |