Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   SITYG_RS09115 Genome accession   NZ_AP014880
Coordinates   1791572..1792594 (-) Length   340 a.a.
NCBI ID   WP_173672242.1    Uniprot ID   -
Organism   Streptococcus intermedius strain TYG1620     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1786572..1797594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS09080 (SITYG_17980) - 1787587..1788786 (-) 1200 WP_009569506.1 acetate kinase -
  SITYG_RS09085 (SITYG_17990) comYH 1788833..1789786 (-) 954 WP_096363205.1 class I SAM-dependent methyltransferase Machinery gene
  SITYG_RS09090 (SITYG_18000) comGG 1789877..1790203 (-) 327 WP_020999196.1 competence type IV pilus minor pilin ComGG -
  SITYG_RS09095 (SITYG_18010) comGF/cglF 1790184..1790621 (-) 438 WP_003073990.1 competence type IV pilus minor pilin ComGF Machinery gene
  SITYG_RS09100 (SITYG_18020) comGE/cglE 1790605..1790898 (-) 294 WP_003073987.1 competence type IV pilus minor pilin ComGE Machinery gene
  SITYG_RS09105 (SITYG_18030) comYD 1790870..1791298 (-) 429 WP_096363206.1 competence type IV pilus minor pilin ComGD Machinery gene
  SITYG_RS09110 (SITYG_18040) comYC 1791258..1791575 (-) 318 WP_003075998.1 competence type IV pilus major pilin ComGC Machinery gene
  SITYG_RS09115 (SITYG_18050) comYB 1791572..1792594 (-) 1023 WP_173672242.1 competence type IV pilus assembly protein ComGB Machinery gene
  SITYG_RS09120 (SITYG_18060) comYA 1792536..1793477 (-) 942 WP_096363208.1 competence type IV pilus ATPase ComGA Machinery gene
  SITYG_RS09125 (SITYG_18070) - 1793546..1793911 (-) 366 WP_009569514.1 DUF1033 family protein -
  SITYG_RS09130 (SITYG_18080) - 1794040..1794756 (-) 717 WP_009569515.1 TipC family immunity protein -
  SITYG_RS10700 (SITYG_18090) - 1794731..1796347 (-) 1617 WP_231870233.1 T7SS effector LXG polymorphic toxin -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 39198.36 Da        Isoelectric Point: 9.7483

>NTDB_id=67286 SITYG_RS09115 WP_173672242.1 1791572..1792594(-) (comYB) [Streptococcus intermedius strain TYG1620]
MQQDISILNRQKRKKLSTVKQKKVVELLNNLFSSGFHLAEIIDFLKRSALLEKAYVEKMKEGLATGKPFSDIMASLGFSD
NVVTQLSLAELHGNLSLSLSKIEEYLENISKVKKKLIEVATYPFILFIFLVFIMLGLRNYLLPQLESQNIATQLISRLPQ
IFLGSVGVVFALFAIGFYWFRKNSQIRVFSLLSRLPFWGTFVQTYLTAYYAREWGNMIGQGLELSQIFQMMQGQRSAMFQ
EIGKDLEVALQNGQEFSQVVKHYPFFKKELGLMIEYGEVKSKLGCELEVYAQKTWEVFFKRVHQAMNIIQPLVFIFVALM
IVLLYAAMLLPIYQNMEVQL

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=67286 SITYG_RS09115 WP_173672242.1 1791572..1792594(-) (comYB) [Streptococcus intermedius strain TYG1620]
ATGCAGCAGGACATATCAATCTTGAACAGGCAAAAGCGGAAAAAATTATCCACAGTTAAGCAGAAAAAAGTCGTAGAGTT
ACTAAATAATCTTTTTTCTAGTGGTTTTCACTTGGCAGAAATTATTGATTTTTTGAAACGGAGTGCTTTGTTAGAAAAAG
CCTATGTGGAAAAGATGAAAGAGGGTTTGGCAACTGGAAAGCCTTTTTCAGACATCATGGCAAGTTTAGGTTTTTCGGAT
AATGTAGTAACACAGCTTTCATTGGCGGAATTGCATGGAAATTTATCGCTCAGTTTGAGTAAAATTGAAGAGTATTTGGA
AAATATCTCAAAAGTCAAGAAAAAGTTAATTGAAGTGGCGACTTATCCATTTATTTTATTCATTTTTCTAGTGTTTATTA
TGTTAGGATTGCGCAATTATTTGTTACCGCAGTTGGAGAGTCAGAATATTGCAACACAACTGATTAGTCGTTTACCACAA
ATTTTTCTGGGTTCAGTAGGAGTTGTTTTTGCTTTGTTTGCGATCGGTTTTTATTGGTTTAGAAAAAACTCACAAATAAG
AGTATTTAGTTTGTTGTCTCGTCTTCCTTTTTGGGGCACTTTTGTTCAAACTTATTTGACAGCTTATTATGCGAGAGAAT
GGGGGAATATGATTGGTCAAGGCTTAGAACTCAGTCAGATTTTCCAGATGATGCAAGGACAGCGCTCTGCTATGTTTCAA
GAAATTGGAAAAGATTTAGAAGTAGCACTGCAAAATGGTCAGGAATTTTCACAAGTAGTTAAACATTATCCATTTTTTAA
AAAAGAATTGGGCTTGATGATTGAATATGGGGAAGTGAAATCCAAATTGGGGTGCGAATTAGAGGTTTATGCTCAAAAAA
CGTGGGAGGTGTTTTTTAAACGTGTTCATCAAGCGATGAATATCATTCAGCCATTAGTATTTATCTTTGTGGCGTTAATG
ATTGTATTGTTGTATGCAGCCATGTTGCTGCCAATTTATCAAAATATGGAGGTTCAATTGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(211-331)

Type II secretion system (T2SS), protein F (T2SSF)

(26-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

73.235

100

0.732
  comGB/cglB Streptococcus mitis NCTC 12261

69.552

98.529

0.685
  comGB/cglB Streptococcus mitis SK321

69.254

98.529

0.682
  comGB/cglB Streptococcus pneumoniae TIGR4

68.358

98.529

0.674
  comGB/cglB Streptococcus pneumoniae R6

68.358

98.529

0.674
  comGB/cglB Streptococcus pneumoniae Rx1

68.358

98.529

0.674
  comGB/cglB Streptococcus pneumoniae D39

68.358

98.529

0.674
  comYB Streptococcus mutans UA140

60.526

100

0.609
  comYB Streptococcus mutans UA159

60.526

100

0.609
  comGB Lactococcus lactis subsp. cremoris KW2

52.226

99.118

0.518

Multiple sequence alignment