Detailed information NTG0067282

Bioinformatically predicted

Overview

• Name: comGF/cglF
• Type: Machinery gene
• Locus tag: SITYG_RS09095
• Genome accession: NZ_AP014880
• Coordinates: 1790184..1790621 (-)
• Length: 145 a.a.
• NCBI ID: WP_003073990.1
• Uniprot ID: -
• Organism: Streptococcus intermedius strain TYG1620
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1785184..1795621

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SITYG_RS09075 (SITYG_17970)	glmS	1785391..1787205 (-)	1815	WP_009569505.1	glutamine--fructose-6-phosphate transaminase (isomerizing)	-
SITYG_RS09080 (SITYG_17980)	-	1787587..1788786 (-)	1200	WP_009569506.1	acetate kinase	-
SITYG_RS09085 (SITYG_17990)	comYH	1788833..1789786 (-)	954	WP_096363205.1	class I SAM-dependent methyltransferase	Machinery gene
SITYG_RS09090 (SITYG_18000)	comGG	1789877..1790203 (-)	327	WP_020999196.1	competence type IV pilus minor pilin ComGG	-
SITYG_RS09095 (SITYG_18010)	comGF/cglF	1790184..1790621 (-)	438	WP_003073990.1	competence type IV pilus minor pilin ComGF	Machinery gene
SITYG_RS09100 (SITYG_18020)	comGE/cglE	1790605..1790898 (-)	294	WP_003073987.1	competence type IV pilus minor pilin ComGE	Machinery gene
SITYG_RS09105 (SITYG_18030)	comYD	1790870..1791298 (-)	429	WP_096363206.1	competence type IV pilus minor pilin ComGD	Machinery gene
SITYG_RS09110 (SITYG_18040)	comYC	1791258..1791575 (-)	318	WP_003075998.1	competence type IV pilus major pilin ComGC	Machinery gene
SITYG_RS09115 (SITYG_18050)	comYB	1791572..1792594 (-)	1023	WP_173672242.1	competence type IV pilus assembly protein ComGB	Machinery gene
SITYG_RS09120 (SITYG_18060)	comYA	1792536..1793477 (-)	942	WP_096363208.1	competence type IV pilus ATPase ComGA	Machinery gene
SITYG_RS09125 (SITYG_18070)	-	1793546..1793911 (-)	366	WP_009569514.1	DUF1033 family protein	-
SITYG_RS09130 (SITYG_18080)	-	1794040..1794756 (-)	717	WP_009569515.1	TipC family immunity protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16858.51 Da
• Isoelectric Point: 10.2149

>NTDB_id=67282 SITYG_RS09095 WP_003073990.1 1790184..1790621(-) (comGF/cglF) [Streptococcus intermedius strain TYG1620]
MFKANKVKAFTLLEALIALFVLSGSVLLFQSMTRLLASEVQTRQHSEQREWLLFADQLEVELTRSSFEKVENNRLYMKQD
GKVIAFGKASGQDFRKTNANGKGYQPMVYDVKKAEISQENELVRIRLLFKRGLEREFIYRVETKS

Nucleotide

• Length: 438 bp

>NTDB_id=67282 SITYG_RS09095 WP_003073990.1 1790184..1790621(-) (comGF/cglF) [Streptococcus intermedius strain TYG1620]
GTGTTCAAAGCAAATAAAGTAAAAGCTTTTACACTTTTAGAGGCTCTGATTGCCCTATTCGTACTTAGTGGAAGTGTGTT
GCTATTTCAATCTATGACGCGTCTTCTGGCTTCTGAAGTCCAAACTCGACAACACAGTGAACAGCGAGAATGGCTTTTGT
TTGCCGATCAACTAGAAGTGGAGTTGACGCGTTCTTCATTTGAAAAAGTGGAGAATAATCGTTTATACATGAAGCAAGAT
GGTAAGGTAATTGCATTTGGAAAAGCAAGTGGACAAGATTTCAGGAAAACCAATGCGAATGGGAAAGGTTATCAGCCCAT
GGTTTATGATGTGAAAAAAGCAGAAATTTCACAGGAAAATGAGCTGGTTCGTATTCGATTACTGTTTAAGAGAGGATTGG
AAAGGGAATTCATCTATCGTGTGGAAACAAAAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (38-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF/cglF	Streptococcus pneumoniae R6	68.571	96.552	0.662
comGF/cglF	Streptococcus pneumoniae TIGR4	68.571	96.552	0.662
comGF/cglF	Streptococcus pneumoniae Rx1	68.571	96.552	0.662
comGF/cglF	Streptococcus pneumoniae D39	68.571	96.552	0.662
comGF/cglF	Streptococcus mitis NCTC 12261	67.857	96.552	0.655
comGF/cglF	Streptococcus mitis SK321	67.857	96.552	0.655
comYF	Streptococcus mutans UA159	41.135	97.241	0.4
comYF	Streptococcus mutans UA140	41.135	97.241	0.4
comGF	Lactococcus lactis subsp. cremoris KW2	42.963	93.103	0.4