Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OIE74_RS12615 Genome accession   NZ_CP109181
Coordinates   2941529..2942587 (-) Length   352 a.a.
NCBI ID   WP_329382096.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01716     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2936529..2947587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE74_RS12595 (OIE74_12595) - 2936561..2937538 (-) 978 WP_329382086.1 ABC transporter permease -
  OIE74_RS12600 (OIE74_12600) - 2937531..2938454 (-) 924 WP_329382089.1 ABC transporter permease -
  OIE74_RS12605 (OIE74_12605) - 2938555..2940189 (-) 1635 WP_329382091.1 ABC transporter substrate-binding protein -
  OIE74_RS12610 (OIE74_12610) - 2940373..2941536 (-) 1164 WP_329382094.1 dipeptide ABC transporter ATP-binding protein -
  OIE74_RS12615 (OIE74_12615) amiE 2941529..2942587 (-) 1059 WP_329382096.1 ABC transporter ATP-binding protein Regulator
  OIE74_RS12620 (OIE74_12620) - 2942599..2943567 (-) 969 WP_329382099.1 ABC transporter permease -
  OIE74_RS12625 (OIE74_12625) - 2943560..2944486 (-) 927 WP_329382102.1 ABC transporter permease -
  OIE74_RS12630 (OIE74_12630) - 2944636..2946279 (-) 1644 WP_329382105.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38510.47 Da        Isoelectric Point: 6.4143

>NTDB_id=672211 OIE74_RS12615 WP_329382096.1 2941529..2942587(-) (amiE) [Streptomyces sp. NBC_01716]
MTIIEETSSVPTPRPGESDTTPLLEVRDLHVEFHTRDGVAKAVNGVNYSVASGETLAVLGESGSGKSVTAQAIMGILDMP
PGSIPQGQILYRGQDMLTMSYEERRKIRGRKIAMIFQDALSSLNPVLSVGYQLGEMYRVHEGLSRKAAKIKAVELMERVN
IPAAKARVNDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLADLQREFNMGLILITHDLGVVAD
VADKIAVMYAGRIVETAPVHELYKRPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLLKIPAGCAFNPRCPKAQDICRT
DVPVLQPVTEQDGTELPGRGSACHFWKETIHG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=672211 OIE74_RS12615 WP_329382096.1 2941529..2942587(-) (amiE) [Streptomyces sp. NBC_01716]
GTGACCATCATCGAAGAAACCTCAAGTGTCCCGACGCCCCGACCGGGCGAGTCGGACACCACCCCGCTGCTCGAAGTACG
CGACCTCCACGTGGAGTTCCACACCCGCGACGGTGTCGCCAAGGCCGTCAACGGGGTGAACTACAGCGTGGCCTCGGGCG
AGACCCTGGCCGTGCTCGGTGAGTCCGGCTCCGGCAAGTCCGTGACCGCGCAGGCGATCATGGGCATTCTCGACATGCCG
CCGGGCTCCATCCCGCAGGGCCAGATCCTGTACCGCGGGCAGGACATGCTCACCATGAGCTACGAGGAGCGGCGGAAGAT
CCGCGGCCGGAAGATCGCGATGATCTTCCAGGACGCGCTCTCCTCGCTCAACCCCGTGCTGTCGGTGGGCTACCAGCTCG
GCGAGATGTACCGGGTCCATGAGGGCCTCTCCCGCAAGGCGGCCAAGATCAAGGCCGTCGAGCTGATGGAGCGGGTCAAC
ATCCCGGCGGCGAAGGCGCGGGTCAACGACTACCCGCACCAGTTCTCCGGCGGTATGCGCCAGCGCATCATGATCGCGAT
GGCGCTCGCACTGGAGCCCGACCTGATCATCGCGGACGAGCCGACGACCGCGCTCGACGTGACCGTGCAGGCCCAGGTGA
TGGACCTGCTCGCGGACCTCCAGCGTGAGTTCAACATGGGGCTGATCCTGATCACCCACGACCTCGGCGTCGTCGCCGAC
GTCGCGGACAAGATCGCCGTCATGTACGCGGGCCGGATCGTGGAGACCGCGCCGGTGCACGAGCTCTACAAGCGGCCTGC
GCACCCGTACACACGCGGTCTGCTCGACTCCATCCCCCGGCTCGACCAGAAGGGGCAGGAGCTCTACGCGATCAAGGGCC
TGCCGCCCAACCTGCTCAAGATCCCGGCCGGCTGCGCGTTCAACCCGCGCTGCCCGAAGGCGCAGGACATCTGCCGTACG
GATGTCCCGGTCCTCCAGCCGGTGACCGAGCAGGACGGTACCGAGCTGCCCGGCCGCGGCAGCGCGTGCCACTTCTGGAA
GGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(254-318)

ABC transporter (ABC_tran)

(44-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

50.676

84.091

0.426
  amiE Streptococcus thermophilus LMG 18311

50

84.091

0.42
  amiE Streptococcus thermophilus LMD-9

50

84.091

0.42
  oppD Streptococcus mutans UA159

47.727

87.5

0.418