Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   MUA35_RS07710 Genome accession   NZ_CP094770
Coordinates   1583024..1583470 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6201     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1578024..1588470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA35_RS07680 (MUA35_07655) gcvPA 1578950..1580296 (-) 1347 WP_115305438.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  MUA35_RS07685 (MUA35_07660) gcvT 1580316..1581407 (-) 1092 WP_262538681.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA35_RS07690 (MUA35_07665) - 1581566..1582090 (-) 525 WP_001015120.1 shikimate kinase -
  MUA35_RS07695 (MUA35_07670) - 1582080..1582226 (-) 147 WP_001789879.1 hypothetical protein -
  MUA35_RS07700 (MUA35_07675) comGF 1582323..1582820 (-) 498 WP_262607516.1 competence type IV pilus minor pilin ComGF Machinery gene
  MUA35_RS07705 (MUA35_07680) comGE 1582738..1583037 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  MUA35_RS07710 (MUA35_07685) comGD 1583024..1583470 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  MUA35_RS07715 (MUA35_07690) comGC 1583448..1583759 (-) 312 WP_262538680.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA35_RS07720 (MUA35_07695) comGB 1583773..1584843 (-) 1071 WP_262538679.1 competence type IV pilus assembly protein ComGB Machinery gene
  MUA35_RS07725 (MUA35_07700) comGA 1584815..1585789 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA35_RS07730 (MUA35_07705) - 1585841..1586464 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  MUA35_RS07735 (MUA35_07710) - 1586461..1586790 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  MUA35_RS07740 (MUA35_07715) - 1586790..1587776 (-) 987 WP_000161315.1 ROK family glucokinase -
  MUA35_RS07745 (MUA35_07720) - 1587773..1587976 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=672210 MUA35_RS07710 WP_001796473.1 1583024..1583470(-) (comGD) [Staphylococcus aureus strain IVB6201]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=672210 MUA35_RS07710 WP_001796473.1 1583024..1583470(-) (comGD) [Staphylococcus aureus strain IVB6201]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993