Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   MUA35_RS07720 Genome accession   NZ_CP094770
Coordinates   1583773..1584843 (-) Length   356 a.a.
NCBI ID   WP_262538679.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6201     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1578773..1589843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA35_RS07680 (MUA35_07655) gcvPA 1578950..1580296 (-) 1347 WP_115305438.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  MUA35_RS07685 (MUA35_07660) gcvT 1580316..1581407 (-) 1092 WP_262538681.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA35_RS07690 (MUA35_07665) - 1581566..1582090 (-) 525 WP_001015120.1 shikimate kinase -
  MUA35_RS07695 (MUA35_07670) - 1582080..1582226 (-) 147 WP_001789879.1 hypothetical protein -
  MUA35_RS07700 (MUA35_07675) comGF 1582323..1582820 (-) 498 WP_262607516.1 competence type IV pilus minor pilin ComGF Machinery gene
  MUA35_RS07705 (MUA35_07680) comGE 1582738..1583037 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  MUA35_RS07710 (MUA35_07685) comGD 1583024..1583470 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  MUA35_RS07715 (MUA35_07690) comGC 1583448..1583759 (-) 312 WP_262538680.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA35_RS07720 (MUA35_07695) comGB 1583773..1584843 (-) 1071 WP_262538679.1 competence type IV pilus assembly protein ComGB Machinery gene
  MUA35_RS07725 (MUA35_07700) comGA 1584815..1585789 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA35_RS07730 (MUA35_07705) - 1585841..1586464 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  MUA35_RS07735 (MUA35_07710) - 1586461..1586790 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  MUA35_RS07740 (MUA35_07715) - 1586790..1587776 (-) 987 WP_000161315.1 ROK family glucokinase -
  MUA35_RS07745 (MUA35_07720) - 1587773..1587976 (-) 204 WP_000087561.1 YqgQ family protein -
  MUA35_RS07750 (MUA35_07725) - 1587957..1589420 (-) 1464 WP_250743365.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41489.97 Da        Isoelectric Point: 10.1030

>NTDB_id=672212 MUA35_RS07720 WP_262538679.1 1583773..1584843(-) (comGB) [Staphylococcus aureus strain IVB6201]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILISIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQAEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=672212 MUA35_RS07720 WP_262538679.1 1583773..1584843(-) (comGB) [Staphylococcus aureus strain IVB6201]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGCACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATAATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAATTTCTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATCCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAGTTAATTTACAACAAATTGAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAATTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGCTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.157

100

0.992
  comGB Staphylococcus aureus N315

99.157

100

0.992