Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG510_RS08880 Genome accession   NZ_CP108660
Coordinates   2026709..2027503 (+) Length   264 a.a.
NCBI ID   WP_164259061.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01089     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2021709..2032503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG510_RS08870 (OG510_08835) - 2022570..2025452 (-) 2883 WP_406136228.1 vitamin B12-dependent ribonucleotide reductase -
  OG510_RS08875 (OG510_08840) nrdR 2025578..2026090 (-) 513 WP_164259063.1 transcriptional regulator NrdR -
  OG510_RS08880 (OG510_08845) dinR/lexA 2026709..2027503 (+) 795 WP_164259061.1 transcriptional repressor LexA Regulator
  OG510_RS08885 (OG510_08850) - 2027672..2029642 (-) 1971 WP_406136229.1 ATP-dependent DNA helicase -
  OG510_RS08890 (OG510_08855) - 2029681..2031486 (-) 1806 WP_406136230.1 IucA/IucC family protein -
  OG510_RS08895 (OG510_08860) - 2031612..2032340 (-) 729 WP_406136231.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28677.46 Da        Isoelectric Point: 6.9854

>NTDB_id=664654 OG510_RS08880 WP_164259061.1 2026709..2027503(+) (dinR/lexA) [Streptomyces sp. NBC_01089]
MTTTADTATITAQDRSQNRLEPVHAMNDAATDPEGQLPPRPTRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQTTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHN
AAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=664654 OG510_RS08880 WP_164259061.1 2026709..2027503(+) (dinR/lexA) [Streptomyces sp. NBC_01089]
GTGACCACGACCGCAGACACCGCCACCATCACCGCCCAGGACCGTTCGCAGAACCGACTCGAGCCGGTGCATGCCATGAA
TGACGCAGCCACGGACCCGGAGGGCCAGCTGCCCCCGCGCCCCACACGCTCGCTGCCCGGACGGCCTCCCGGTATCCGGG
CGGACAGCTCAGGGCTCACGGACCGGCAGCGGCGGGTGATCGAGGTGATCAGGGACTCCGTGCAGCGCCGTGGGTATCCG
CCGTCGATGCGCGAGATCGGTCAGGCGGTCGGGCTGTCCAGCACCTCGTCCGTCGCCCATCAGCTCATGGCCCTGGAGCG
CAAGGGCTTCCTGCGCCGTGACCCGCACCGCCCCCGGGCGTACGAGGTCAGGGGCTCGGACCAGCCGAGCACCCAGACCA
CCGACACCACGGGCAAGCCCGCCGCGTCGTATGTGCCGCTGGTCGGCCGGATCGCCGCCGGTGGGCCGATCCTGGCCGAG
GAGTCGGTCGAGGACGTCTTCCCGCTCCCCCGGCAGTTGGTCGGTGACGGCGAGCTCTTCGTCCTGAAGGTCGTGGGCGA
CTCCATGATCGAGGCCGCCATCTGTGACGGCGACTGGGTCACCGTGCGCCGCCAGCCCGTCGCGGAAAACGGCGACATCG
TGGCCGCCATGCTGGAGGGCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTGCTGCCGCACAAT
GCCGCTTACCAGCCCATCCCCGGTGACGAAGCCACCATCCTCGGCAAGGTTGTGGCCGTGCTCCGACGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371