Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHU26_RS14260 Genome accession   NZ_CP108249
Coordinates   3242881..3244284 (+) Length   467 a.a.
NCBI ID   WP_266626817.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3237881..3249284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU26_RS14245 (OHU26_14200) - 3239115..3240044 (-) 930 WP_405701486.1 Ppx/GppA family phosphatase -
  OHU26_RS14250 (OHU26_14205) - 3240216..3240965 (+) 750 WP_389874932.1 hypothetical protein -
  OHU26_RS14255 (OHU26_14210) - 3240991..3242709 (-) 1719 WP_327362004.1 BACON domain-containing protein -
  OHU26_RS14260 (OHU26_14215) radA/sms 3242881..3244284 (+) 1404 WP_266626817.1 DNA repair protein RadA Machinery gene
  OHU26_RS14265 (OHU26_14220) disA 3244538..3245662 (+) 1125 WP_266626819.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHU26_RS14270 (OHU26_14225) - 3245684..3246472 (-) 789 WP_405706326.1 hypothetical protein -
  OHU26_RS14275 (OHU26_14230) - 3246642..3247256 (+) 615 WP_362630653.1 phosphatase PAP2 family protein -
  OHU26_RS14280 (OHU26_14235) - 3247280..3248233 (+) 954 WP_266626824.1 A/G-specific adenine glycosylase -
  OHU26_RS14285 (OHU26_14240) - 3248417..3248989 (+) 573 WP_030158464.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 48717.84 Da        Isoelectric Point: 8.0067

>NTDB_id=657309 OHU26_RS14260 WP_266626817.1 3242881..3244284(+) (radA/sms) [Streptomyces sp. NBC_00069]
MAARTSRSSAKDRPSYRCSECGWTTAKWLGRCPECQAWGTVEEMGGAPAVRTTAAGRVSAPALPIAQVDGRTATARSTGV
DELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEAHRTLYVTGEESASQVRLRADRINALSDHLFLAAETDLS
AVLGHLDAVQPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVV
LSFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVD
SQIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGE
VGLAGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKVPAGMKVTEVADMGDALRVLPRGRSRAAAKE

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=657309 OHU26_RS14260 WP_266626817.1 3242881..3244284(+) (radA/sms) [Streptomyces sp. NBC_00069]
ATGGCTGCCCGTACATCTCGTTCATCCGCCAAGGACCGGCCGTCCTACCGCTGCTCCGAGTGCGGTTGGACGACCGCGAA
ATGGCTCGGGCGGTGCCCCGAATGCCAGGCGTGGGGCACCGTGGAGGAGATGGGCGGGGCGCCCGCGGTGCGGACCACCG
CCGCCGGGCGGGTCTCGGCGCCCGCGCTCCCGATCGCGCAGGTCGACGGCCGGACGGCGACCGCCCGCAGCACCGGCGTG
GACGAGCTGGACCGGGTCCTCGGCGGCGGGCTCGTGCCCGGCGCCGTCGTCCTGCTGGCCGGCGAGCCCGGCGTCGGCAA
GTCGACGCTGCTGCTGGACGTGGCGGCGAAGGCGGCCAGCGAGGCGCACCGCACGCTGTACGTCACGGGCGAGGAGTCGG
CGAGCCAGGTGCGGCTGCGGGCCGACCGGATCAACGCGCTGAGCGACCACCTCTTCCTCGCCGCCGAGACGGATCTGTCC
GCCGTATTGGGCCACCTCGACGCCGTGCAGCCCTCGCTGCTGATCCTGGACTCCGTACAGACCGTGGCCTCCCCCGAGAT
CGACGGCGCACCCGGCGGCATGGCCCAGGTCCGCGAGGTGGCCGGGGCGCTGATCCGCGCCTCCAAGGAGCGCGGGATGG
CCACCCTGCTGGTCGGGCACGTCACCAAGGACGGGGCGATCGCCGGCCCCCGGCTGCTGGAGCACCTGGTGGACGTGGTC
CTCAGCTTCGAGGGCGACCGGCACGCGCGCCTGCGCCTCGTACGCGGCGTGAAGAACCGGTACGGGGCCACCGACGAGGT
CGGCTGCTTCGAACTCCACGACGAGGGGATCACCGGGCTCGCCGACCCGAGCGGGCTGTTCCTGACCCGGCGCGCGGAGG
CCGTCCCCGGGACCTGCCTGACGGTGACCCTGGAGGGCAAGCGCCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTGGAC
TCGCAGATCCCCTCGCCCCGGCGGACCACCTCGGGCCTGGAGACCTCACGCGTCTCGATGATGCTGGCGGTGCTGGAGCA
GCGCGGCCGGATCACCGCGCTCGGCAAGCGCGACATCTACTCCGCCACCGTGGGCGGGGTGAAGCTGACGGAGCCGGCCG
CCGACCTGGCGATCGCGCTCGCGCTGGCCTCGGCGGCGAGCGACGTCCCGCTGCCGAAGAACCTCGTCGCGATCGGCGAG
GTCGGCCTCGCGGGCGAGGTGCGGCGCGTGACCGGCGTGCAGCGGCGGCTCGCGGAGGCGCACCGGCTCGGTTTCACGCA
CGCGCTGGTGCCCGGCGATCCCGGGAAGGTGCCGGCCGGGATGAAGGTCACCGAGGTCGCGGACATGGGCGACGCCCTGC
GGGTCCTGCCGCGCGGGCGGTCGCGGGCGGCGGCCAAGGAGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

Subunit ChlI of Mg-chelatase (ChlI)

(373-431)

AAA domain (AAA_25)

(85-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.833

97.216

0.426
  radA Streptococcus pneumoniae D39

42.572

96.574

0.411
  radA Streptococcus pneumoniae R6

42.572

96.574

0.411
  radA Streptococcus pneumoniae Rx1

42.572

96.574

0.411
  radA Streptococcus pneumoniae TIGR4

42.572

96.574

0.411
  radA Streptococcus mitis NCTC 12261

44.028

91.435

0.403
  radA Streptococcus mitis SK321

44.028

91.435

0.403