Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC/cglC   Type   Machinery gene
Locus tag   H020_RS0110380 Genome accession   NZ_AKVY01000001
Coordinates   1954277..1954603 (-) Length   108 a.a.
NCBI ID   WP_000738627.1    Uniprot ID   A0A0H2URU9
Organism   Streptococcus pneumoniae TIGR4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1949277..1959603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H020_RS0110330 rnpA 1949294..1949665 (-) 372 WP_000739253.1 ribonuclease P protein component -
  H020_RS14575 - 1949682..1949813 (-) 132 WP_000768904.1 hypothetical protein -
  H020_RS0110340 - 1949814..1951004 (-) 1191 WP_000167757.1 acetate kinase -
  H020_RS0110345 comYH 1951055..1952008 (-) 954 WP_000345135.1 class I SAM-dependent methyltransferase Machinery gene
  H020_RS13165 - 1952069..1952663 (-) 595 Protein_1937 class I SAM-dependent methyltransferase -
  H020_RS0110360 comGG/cglG 1952800..1953213 (-) 414 WP_000265622.1 competence type IV pilus minor pilin ComGG Machinery gene
  H020_RS0110365 comGF/cglF 1953191..1953652 (-) 462 WP_000250534.1 competence type IV pilus minor pilin ComGF Machinery gene
  H020_RS0110370 comGE/cglE 1953615..1953917 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  H020_RS0110375 comGD/cglD 1953880..1954284 (-) 405 WP_000588028.1 competence type IV pilus minor pilin ComGD Machinery gene
  H020_RS0110380 comGC/cglC 1954277..1954603 (-) 327 WP_000738627.1 comG operon protein ComGC Machinery gene
  H020_RS0110385 comGB/cglB 1954605..1955621 (-) 1017 WP_074196785.1 competence type IV pilus assembly protein ComGB Machinery gene
  H020_RS0110390 comGA/cglA/cilD 1955569..1956510 (-) 942 WP_000249564.1 competence type IV pilus ATPase ComGA Machinery gene
  H020_RS0110395 - 1956586..1956951 (-) 366 WP_000286415.1 DUF1033 family protein -
  H020_RS0110400 - 1957102..1958160 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -
  H020_RS0110405 nagA 1958323..1959474 (-) 1152 WP_001134456.1 N-acetylglucosamine-6-phosphate deacetylase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12177.34 Da        Isoelectric Point: 10.1876

>NTDB_id=64966 H020_RS0110380 WP_000738627.1 1954277..1954603(-) (comGC/cglC) [Streptococcus pneumoniae TIGR4]
MKKMMTFLKKAKVKAFTLVEMLVVLLIISVLFLLFVPNLTKQKEAVNDKGKAAVVKVVESQAELYSLEKNEDASLRKLQA
DGRITEEQAKAYKEYNDKNGGANRKVND

Nucleotide


Download         Length: 327 bp        

>NTDB_id=64966 H020_RS0110380 WP_000738627.1 1954277..1954603(-) (comGC/cglC) [Streptococcus pneumoniae TIGR4]
ATGAAAAAAATGATGACATTCTTGAAAAAAGCTAAGGTTAAAGCTTTTACATTGGTGGAGATGTTGGTGGTCTTGCTGAT
TATCAGCGTGCTTTTCTTGCTCTTTGTACCTAATCTGACCAAGCAAAAAGAAGCAGTCAATGACAAAGGAAAAGCAGCTG
TTGTTAAGGTGGTGGAAAGCCAGGCAGAACTTTATAGCTTAGAAAAGAATGAAGATGCTAGCCTAAGAAAGTTACAAGCA
GATGGACGCATCACGGAAGAACAGGCTAAAGCTTATAAAGAATACAATGATAAAAATGGAGGAGCAAATCGTAAAGTCAA
TGATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5NCA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC/cglC Streptococcus pneumoniae TIGR4

100

100

1
  comGC/cglC Streptococcus pneumoniae Rx1

99.074

100

0.991
  comGC/cglC Streptococcus pneumoniae D39

99.074

100

0.991
  comGC/cglC Streptococcus pneumoniae R6

99.074

100

0.991
  comGC/cglC Streptococcus mitis SK321

94.444

100

0.944
  comGC/cglC Streptococcus mitis NCTC 12261

94.898

90.741

0.861
  comYC Streptococcus gordonii str. Challis substr. CH1

67.961

95.37

0.648
  comYC Streptococcus mutans UA140

62.745

94.444

0.593
  comYC Streptococcus mutans UA159

62.745

94.444

0.593
  comYC Streptococcus suis isolate S10

70.37

75

0.528
  comGC Lactococcus lactis subsp. cremoris KW2

53.922

94.444

0.509
  comGC Staphylococcus aureus MW2

50

79.63

0.398
  comGC Staphylococcus aureus N315

50

79.63

0.398
  comGC Latilactobacillus sakei subsp. sakei 23K

45.349

79.63

0.361

Multiple sequence alignment