Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   L3D22_RS17615 Genome accession   NZ_CP091317
Coordinates   3883209..3883631 (+) Length   140 a.a.
NCBI ID   WP_192632426.1    Uniprot ID   -
Organism   Lysobacter soli strain RCu6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3878209..3888631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3D22_RS17590 (L3D22_17600) pilR 3878414..3879877 (+) 1464 WP_192632430.1 sigma-54 dependent transcriptional regulator Regulator
  L3D22_RS17595 (L3D22_17605) - 3879895..3880608 (-) 714 WP_192632429.1 methyltransferase domain-containing protein -
  L3D22_RS17600 (L3D22_17610) - 3880616..3881629 (-) 1014 WP_192632613.1 glycosyltransferase family 2 protein -
  L3D22_RS17605 (L3D22_17615) - 3881643..3882509 (-) 867 WP_192632428.1 glycosyltransferase family 2 protein -
  L3D22_RS17610 (L3D22_17620) - 3882440..3882823 (-) 384 WP_192632427.1 hypothetical protein -
  L3D22_RS17615 (L3D22_17625) pilA2 3883209..3883631 (+) 423 WP_192632426.1 pilin Machinery gene
  L3D22_RS17620 (L3D22_17630) - 3883705..3885651 (+) 1947 WP_253336537.1 hypothetical protein -
  L3D22_RS17625 (L3D22_17635) pilB 3885727..3887449 (+) 1723 Protein_3468 type IV-A pilus assembly ATPase PilB -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 14325.66 Da        Isoelectric Point: 9.0253

>NTDB_id=649132 L3D22_RS17615 WP_192632426.1 3883209..3883631(+) (pilA2) [Lysobacter soli strain RCu6]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKISEALVMAAPAKLAVAETSSSLGSLGLVTASNAGYTFPGSTK
YVSGIQITGTTGVVTVTSTVPNASGAITLTPTAVGSSAQLTWVCRSTAIDAKYLPAECRP

Nucleotide


Download         Length: 423 bp        

>NTDB_id=649132 L3D22_RS17615 WP_192632426.1 3883209..3883631(+) (pilA2) [Lysobacter soli strain RCu6]
ATGAAGAAGCAGCAGGGCTTTACGCTGATCGAACTGATGATCGTCGTCGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGGCTTACCAGGACTACACCACCCGCGCCAAGATCTCCGAAGCGCTGGTGATGGCCGCTCCGGCCAAGCTCGCCGTGG
CCGAGACGTCCTCCTCGCTGGGCTCGCTGGGTCTGGTGACCGCCAGCAACGCTGGCTACACGTTCCCGGGCTCGACCAAG
TACGTCAGCGGCATCCAGATCACCGGCACCACCGGTGTCGTGACCGTCACCTCGACCGTGCCGAATGCCTCGGGCGCCAT
CACGCTGACCCCCACGGCCGTGGGCTCCTCCGCGCAGCTGACGTGGGTGTGCCGCTCGACCGCCATCGACGCGAAGTACC
TGCCGGCCGAGTGCCGCCCGTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-139)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila strain ERS1305867

51.449

98.571

0.507
  pilA2 Legionella pneumophila str. Paris

51.449

98.571

0.507
  comP Acinetobacter baylyi ADP1

45.638

100

0.486
  pilA Ralstonia pseudosolanacearum GMI1000

40.854

100

0.479
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.326

100

0.464
  pilA/pilAI Pseudomonas stutzeri DSM 10701

45

100

0.45
  pilE Neisseria gonorrhoeae strain FA1090

38.65

100

0.45
  pilE Neisseria gonorrhoeae MS11

39.241

100

0.443
  pilA/pilA1 Eikenella corrodens VA1

40

100

0.429
  pilA Pseudomonas aeruginosa PAK

37.58

100

0.421
  pilA/pilAII Pseudomonas stutzeri DSM 10701

39.706

97.143

0.386
  pilA Haemophilus influenzae 86-028NP

36.364

100

0.371