Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   L3D22_RS17590 Genome accession   NZ_CP091317
Coordinates   3878414..3879877 (+) Length   487 a.a.
NCBI ID   WP_192632430.1    Uniprot ID   -
Organism   Lysobacter soli strain RCu6     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3873414..3884877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3D22_RS17575 (L3D22_17585) sucD 3874432..3875307 (-) 876 WP_115841436.1 succinate--CoA ligase subunit alpha -
  L3D22_RS17580 (L3D22_17590) sucC 3875320..3876486 (-) 1167 WP_115841435.1 ADP-forming succinate--CoA ligase subunit beta -
  L3D22_RS17585 (L3D22_17595) - 3876705..3878330 (+) 1626 WP_253336535.1 ATP-binding protein -
  L3D22_RS17590 (L3D22_17600) pilR 3878414..3879877 (+) 1464 WP_192632430.1 sigma-54 dependent transcriptional regulator Regulator
  L3D22_RS17595 (L3D22_17605) - 3879895..3880608 (-) 714 WP_192632429.1 methyltransferase domain-containing protein -
  L3D22_RS17600 (L3D22_17610) - 3880616..3881629 (-) 1014 WP_192632613.1 glycosyltransferase family 2 protein -
  L3D22_RS17605 (L3D22_17615) - 3881643..3882509 (-) 867 WP_192632428.1 glycosyltransferase family 2 protein -
  L3D22_RS17610 (L3D22_17620) - 3882440..3882823 (-) 384 WP_192632427.1 hypothetical protein -
  L3D22_RS17615 (L3D22_17625) pilA2 3883209..3883631 (+) 423 WP_192632426.1 pilin Machinery gene

Sequence

Protein


Download         Length: 487 a.a.        Molecular weight: 52350.07 Da        Isoelectric Point: 6.7659

>NTDB_id=649131 L3D22_RS17590 WP_192632430.1 3878414..3879877(+) (pilR) [Lysobacter soli strain RCu6]
MAETRSALVVDDERDIRELLVMTLGRMGLRCDTASTLGEARGQLARNRYDLCLTDMRLPDGSGMDLVAEISQKHPETPVA
MITAFGNVEAAVEALKAGAFDFVAKPVDLAVLRDLVRHALDLNERRKSAPPADIVAARLYGQSPAMATLRGTIAKVARSQ
APVYIVGESGVGKELVARTIHAEGARSTGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQSADGGTLFLDEI
AELPLAMQVKLLRAIQEKSIRPVGANAEVPVDVRILSATHKDLAALVADGRFRQDLYYRINVIELRVPPLRERQDDLPGL
AEKVLQRLSLAQGRVFPPTLSADALDTLRAYAFPGNVRELENILERALALAEGDSLTAEDLRLPKAANTVPTATPIAATG
ATSATAPANSAAPPLMVPGQPAQAIDPRTLNPRDTASSPLPSYIEEIERAAIQQALQENRYNKTRTAAALGITFRALRYK
LKKLGID

Nucleotide


Download         Length: 1464 bp        

>NTDB_id=649131 L3D22_RS17590 WP_192632430.1 3878414..3879877(+) (pilR) [Lysobacter soli strain RCu6]
ATGGCTGAAACACGTAGTGCATTGGTGGTCGACGACGAACGCGACATCCGCGAACTGCTCGTCATGACCCTGGGCCGCAT
GGGCCTTCGATGCGACACCGCCTCCACGCTCGGCGAAGCCCGCGGCCAGCTCGCGCGCAATCGCTATGACCTGTGCCTGA
CGGACATGCGCCTGCCGGACGGCTCGGGCATGGACCTGGTCGCCGAGATCAGCCAGAAGCATCCCGAAACGCCGGTCGCG
ATGATCACCGCCTTCGGCAACGTCGAAGCCGCGGTCGAGGCCTTGAAGGCCGGCGCGTTCGACTTCGTCGCCAAGCCCGT
GGACCTGGCCGTGCTGCGCGACCTGGTCCGCCACGCGCTGGACCTCAACGAACGCCGCAAGAGCGCGCCGCCGGCCGACA
TCGTCGCCGCGCGCCTGTACGGACAGTCGCCGGCGATGGCGACCCTCCGCGGCACGATCGCGAAGGTCGCCCGCAGCCAG
GCGCCGGTGTACATCGTCGGCGAATCGGGCGTGGGCAAGGAACTGGTGGCCCGCACGATCCACGCCGAAGGCGCGCGTTC
GACCGGACCGTTCGTGCCGGTGAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAGG
GCAGCTTCACCGGCGCACATGCCGACAAGCCGGGCCTATTCCAGAGCGCCGACGGCGGCACGCTGTTCCTGGACGAAATC
GCCGAGCTTCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGATCCGCCCGGTGGGCGCGAACGC
CGAAGTGCCGGTGGACGTGCGCATCCTGTCGGCCACGCACAAGGATCTGGCGGCGCTCGTCGCCGACGGCCGCTTCCGCC
AGGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCCAGGACGACCTGCCCGGTCTC
GCCGAGAAGGTGCTGCAGCGCCTTTCGCTCGCGCAGGGCCGCGTGTTCCCGCCAACGCTGTCGGCCGACGCGCTCGACAC
GCTGCGCGCCTATGCTTTCCCGGGCAACGTGCGCGAACTGGAGAACATCCTCGAACGCGCGCTTGCACTCGCCGAGGGCG
ACAGCCTGACGGCCGAGGACTTGCGTTTGCCGAAGGCCGCGAACACGGTGCCCACCGCGACGCCGATTGCGGCTACGGGT
GCGACGTCGGCGACTGCGCCCGCGAATTCCGCAGCACCGCCGCTGATGGTGCCAGGCCAGCCGGCGCAGGCGATCGATCC
GCGTACGCTCAACCCGCGCGATACGGCCAGCAGCCCCCTGCCCTCGTACATCGAGGAAATCGAACGCGCCGCGATCCAGC
AGGCGCTGCAGGAGAACCGCTACAACAAGACGCGCACCGCGGCAGCGCTGGGCATTACCTTCCGCGCGCTGCGCTACAAG
CTGAAGAAGCTCGGCATCGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(444-484)

Sigma-54 interaction domain (Sigma54_activat)

(140-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

59.504

99.384

0.591
  pilR Acinetobacter baumannii strain A118

46.721

100

0.468