Detailed information
Bioinformatically predicted
Overview
| Name | comP | Type | Machinery gene |
| Locus tag | LPY95_RS05570 | Genome accession | NZ_CP090564 |
| Coordinates | 1331530..1331958 (+) | Length | 142 a.a. |
| NCBI ID | WP_269359698.1 | Uniprot ID | - |
| Organism | Xanthomonas citri pv. malvacearum strain CFBP 2012 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1326530..1336958
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPY95_RS05555 (LPY95_05560) | coaE | 1328434..1329042 (-) | 609 | WP_005915836.1 | dephospho-CoA kinase | - |
| LPY95_RS05560 (LPY95_05565) | - | 1329056..1329919 (-) | 864 | WP_269356848.1 | A24 family peptidase | - |
| LPY95_RS05565 (LPY95_05570) | pilC | 1329926..1331185 (-) | 1260 | WP_033836749.1 | type II secretion system F family protein | Machinery gene |
| LPY95_RS05570 (LPY95_05575) | comP | 1331530..1331958 (+) | 429 | WP_269359698.1 | pilin | Machinery gene |
| LPY95_RS05575 | pilA2 | 1332055..1332468 (+) | 414 | WP_005921365.1 | pilin | Machinery gene |
| LPY95_RS05580 (LPY95_05590) | pilB | 1332510..1334246 (+) | 1737 | WP_033836748.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| LPY95_RS05585 (LPY95_05595) | - | 1334524..1334691 (+) | 168 | WP_033836746.1 | hypothetical protein | - |
| LPY95_RS05590 (LPY95_05600) | pilR | 1334878..1336332 (-) | 1455 | WP_269359700.1 | sigma-54 dependent transcriptional regulator | Regulator |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14529.65 Da Isoelectric Point: 8.4798
>NTDB_id=643495 LPY95_RS05570 WP_269359698.1 1331530..1331958(+) (comP) [Xanthomonas citri pv. malvacearum strain CFBP 2012]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSELAVMASSFKTTVAENIANNGGTLPADACVGVGATAATTN
MASIACTPATGNIVVTGDATRTKGTVLTYAPTVGGANSAVGTTWTCTGSGSQSKYYPSECRR
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSELAVMASSFKTTVAENIANNGGTLPADACVGVGATAATTN
MASIACTPATGNIVVTGDATRTKGTVLTYAPTVGGANSAVGTTWTCTGSGSQSKYYPSECRR
Nucleotide
Download Length: 429 bp
>NTDB_id=643495 LPY95_RS05570 WP_269359698.1 1331530..1331958(+) (comP) [Xanthomonas citri pv. malvacearum strain CFBP 2012]
ATGAAGAAGCAACAAGGCTTTACCCTGATCGAATTGATGATCGTTGTTGCGATCATCGCAATCCTGGCCGCCATTGCTCT
TCCGGCTTATCAGGACTACACCATTCGCTCGCGTGTTTCGGAACTGGCCGTGATGGCTAGCTCCTTTAAGACGACCGTTG
CGGAAAACATCGCCAACAACGGCGGCACCCTGCCAGCTGACGCTTGCGTCGGCGTTGGTGCTACCGCTGCGACCACTAAT
ATGGCTTCCATCGCTTGCACTCCCGCGACTGGCAACATCGTCGTAACCGGCGATGCAACTCGGACCAAGGGAACCGTTTT
GACCTATGCTCCGACAGTGGGCGGTGCTAACTCGGCGGTTGGTACCACTTGGACCTGCACCGGCAGTGGTAGCCAGTCCA
AGTACTATCCGTCCGAGTGCCGCCGCTAA
ATGAAGAAGCAACAAGGCTTTACCCTGATCGAATTGATGATCGTTGTTGCGATCATCGCAATCCTGGCCGCCATTGCTCT
TCCGGCTTATCAGGACTACACCATTCGCTCGCGTGTTTCGGAACTGGCCGTGATGGCTAGCTCCTTTAAGACGACCGTTG
CGGAAAACATCGCCAACAACGGCGGCACCCTGCCAGCTGACGCTTGCGTCGGCGTTGGTGCTACCGCTGCGACCACTAAT
ATGGCTTCCATCGCTTGCACTCCCGCGACTGGCAACATCGTCGTAACCGGCGATGCAACTCGGACCAAGGGAACCGTTTT
GACCTATGCTCCGACAGTGGGCGGTGCTAACTCGGCGGTTGGTACCACTTGGACCTGCACCGGCAGTGGTAGCCAGTCCA
AGTACTATCCGTCCGAGTGCCGCCGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comP | Acinetobacter baylyi ADP1 |
54.967 |
100 |
0.585 |
| pilA2 | Legionella pneumophila str. Paris |
54.61 |
99.296 |
0.542 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
53.901 |
99.296 |
0.535 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
40.854 |
100 |
0.472 |
| pilA | Pseudomonas aeruginosa PAK |
37.58 |
100 |
0.415 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
35.542 |
100 |
0.415 |
| pilA/pilA1 | Eikenella corrodens VA1 |
38.411 |
100 |
0.408 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
40.278 |
100 |
0.408 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.559 |
100 |
0.408 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
40.31 |
90.845 |
0.366 |
| pilA | Haemophilus influenzae 86-028NP |
38.235 |
95.775 |
0.366 |