Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   OFY20_RS01720 Genome accession   NZ_CP107524
Coordinates   285756..287741 (+) Length   661 a.a.
NCBI ID   WP_000141866.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SA5087     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 280756..292741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFY20_RS01705 (OFY20_01705) - 282087..282785 (+) 699 WP_000350763.1 MIP/aquaporin family protein -
  OFY20_RS01710 (OFY20_01710) - 282873..284210 (+) 1338 WP_047200506.1 FAD/NAD(P)-binding oxidoreductase -
  OFY20_RS01715 (OFY20_01715) - 284201..285631 (+) 1431 WP_001217276.1 helix-turn-helix domain-containing protein -
  OFY20_RS01720 (OFY20_01720) recP/tkt 285756..287741 (+) 1986 WP_000141866.1 transketolase Machinery gene
  OFY20_RS01725 (OFY20_01725) - 287954..288259 (+) 306 WP_000711207.1 bacteriocin immunity protein -
  OFY20_RS01730 (OFY20_01730) pptA 288279..289013 (+) 735 WP_000589162.1 ABC transporter ATP-binding protein Regulator
  OFY20_RS01735 (OFY20_01735) - 289017..290621 (+) 1605 WP_001104587.1 ABC transporter permease -
  OFY20_RS01740 (OFY20_01740) - 290829..292214 (-) 1386 WP_001865878.1 PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 71207.78 Da        Isoelectric Point: 4.5948

>NTDB_id=643495 OFY20_RS01720 WP_000141866.1 285756..287741(+) (recP/tkt) [Streptococcus agalactiae strain SA5087]
MTFDTIDQLAVNTVRTLSIDAIQAANSGHPGLPMGAAPMAYVLWNKFLNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LAGYDLSIDDLKQFRQWGSKTPGHPEVNHTDGVEATTGPLGQGIANAVGMAMAEAHLAAKFNKPGFDLVDHYTYTLHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSQSFTEDVKGRFESYGWQHILVKDGNDLEAIAAAIEAAKAETD
KPTIIEVKTIIGFGAEKQGTSSVHGAPLGAEGITFAKKAYGWEYPDFTVPAEVADRFASDLQARGAKAEEAWNDLFAKYE
VEYPELATEYKEAFAGQAETVELKAHDLGSSVASRVSSQQAIQQLSTQLPNLWGGSADLSASNNTMVAAETDFQASNYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPTVYVMTHDSIAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWQRAVSETDRPTMLVLTRQNLPVLEGTSELAQEGVNKGAYILSEAKGELDGIIIATGSEV
KLALDTQDKLESEGIHVRVVSMPAQNIFDEQEASYQEQVLPSAVTKRLAIEAGSSFGWGKYVGLNGLTLTIDTWGASAPG
NRIFEEYGFTVENAVSLYKEL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=643495 OFY20_RS01720 WP_000141866.1 285756..287741(+) (recP/tkt) [Streptococcus agalactiae strain SA5087]
ATGACATTTGACACCATTGATCAATTAGCGGTTAATACAGTCCGCACGCTTTCTATTGATGCTATCCAAGCAGCAAATTC
TGGGCACCCAGGTCTTCCTATGGGAGCTGCGCCTATGGCTTATGTGCTTTGGAATAAATTCTTAAATGTAAACCCAAAAA
CAAGTCGCAATTGGACAAACCGTGACCGTTTTGTGCTATCAGCTGGGCATGGTTCAGCTCTTCTTTATAGCCTACTTCAT
TTAGCTGGCTATGATTTATCAATTGATGATTTAAAACAATTTCGCCAATGGGGATCAAAAACACCTGGACATCCAGAAGT
TAACCATACTGATGGTGTAGAAGCAACAACTGGACCTTTAGGGCAAGGTATTGCTAATGCTGTTGGTATGGCAATGGCTG
AAGCTCATTTGGCTGCTAAATTTAATAAACCAGGCTTTGATTTAGTTGATCATTACACTTATACACTTCATGGTGATGGT
TGTTTGATGGAGGGTGTTAGCCAAGAAGCTGCCAGTCTTGCTGGACACTTAAAACTTGGTAAATTGGTCCTTCTTTATGA
TTCAAATGATATCTCACTTGATGGTCCAACATCTCAATCATTTACAGAAGATGTTAAAGGACGTTTTGAATCATATGGTT
GGCAACATATCTTAGTTAAAGATGGTAATGATTTAGAAGCGATTGCTGCAGCAATTGAAGCTGCTAAAGCTGAAACTGAT
AAACCAACCATTATTGAAGTTAAAACTATTATTGGATTTGGCGCAGAGAAACAGGGAACATCTTCAGTTCATGGAGCGCC
ACTTGGTGCAGAAGGTATTACTTTTGCCAAGAAGGCTTATGGATGGGAATATCCAGACTTTACTGTTCCTGCTGAAGTTG
CAGATCGATTTGCCTCAGATCTTCAAGCGCGTGGTGCGAAGGCAGAAGAGGCATGGAATGATCTTTTTGCTAAATATGAA
GTTGAGTATCCAGAATTAGCAACTGAATACAAAGAAGCTTTTGCTGGCCAAGCTGAGACAGTTGAACTGAAAGCTCATGA
CCTAGGTTCATCAGTGGCTAGTCGTGTTTCAAGCCAACAAGCTATTCAACAATTATCGACTCAATTACCGAACCTCTGGG
GAGGGTCAGCAGACCTCTCAGCTTCTAATAACACAATGGTAGCAGCAGAAACAGATTTCCAAGCAAGTAACTACGCTGGG
CGTAATATTTGGTTTGGTGTACGTGAATTTGCAATGGCTGCTGCAATGAATGGAATTGCGCTTCACGGTGGGACTCGTGT
TTATGGGGGTACGTTCTTTGTCTTCTCAAACTACTTGTTACCAGCAGTACGTATGGCTGCACTTCAAAACTTGCCAACTG
TCTATGTTATGACACATGATTCTATTGCTGTTGGAGAAGATGGGCCAACTCATGAGCCAATAGAACAATTAGCATCAGTG
CGCTCAATGCCTAATTTGAACGTTATCCGTCCCGCAGACGGTAATGAAACAAACGCTGCATGGCAACGAGCTGTATCAGA
GACAGATCGACCAACGATGCTTGTTTTAACACGTCAAAACTTACCAGTTCTTGAAGGAACATCAGAATTAGCCCAAGAAG
GGGTTAATAAAGGTGCTTATATTTTATCAGAAGCTAAAGGTGAACTTGATGGTATCATCATTGCAACAGGTTCAGAAGTT
AAATTAGCTTTAGATACTCAAGACAAACTTGAGTCAGAGGGCATCCATGTTCGCGTCGTATCTATGCCAGCACAAAACAT
TTTTGATGAACAAGAGGCTTCATATCAAGAGCAAGTGCTTCCATCAGCTGTTACAAAACGTCTTGCTATTGAGGCAGGAT
CAAGCTTCGGTTGGGGTAAATATGTTGGTTTAAATGGGCTAACACTTACTATTGATACTTGGGGAGCATCAGCACCAGGT
AACAGAATTTTCGAAGAGTATGGCTTTACAGTTGAGAATGCTGTATCGCTATATAAAGAACTTTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.079

99.546

0.558