Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   LPY95_RS05575 Genome accession   NZ_CP090564
Coordinates   1332055..1332468 (+) Length   137 a.a.
NCBI ID   WP_005921365.1    Uniprot ID   -
Organism   Xanthomonas citri pv. malvacearum strain CFBP 2012     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1327055..1337468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPY95_RS05555 (LPY95_05560) coaE 1328434..1329042 (-) 609 WP_005915836.1 dephospho-CoA kinase -
  LPY95_RS05560 (LPY95_05565) - 1329056..1329919 (-) 864 WP_269356848.1 A24 family peptidase -
  LPY95_RS05565 (LPY95_05570) pilC 1329926..1331185 (-) 1260 WP_033836749.1 type II secretion system F family protein Machinery gene
  LPY95_RS05570 (LPY95_05575) comP 1331530..1331958 (+) 429 WP_269359698.1 pilin Machinery gene
  LPY95_RS05575 pilA2 1332055..1332468 (+) 414 WP_005921365.1 pilin Machinery gene
  LPY95_RS05580 (LPY95_05590) pilB 1332510..1334246 (+) 1737 WP_033836748.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LPY95_RS05585 (LPY95_05595) - 1334524..1334691 (+) 168 WP_033836746.1 hypothetical protein -
  LPY95_RS05590 (LPY95_05600) pilR 1334878..1336332 (-) 1455 WP_269359700.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14164.27 Da        Isoelectric Point: 8.1169

>NTDB_id=643496 LPY95_RS05575 WP_005921365.1 1332055..1332468(+) (pilA2) [Xanthomonas citri pv. malvacearum strain CFBP 2012]
MSRVNGFTLLELMIVVAIVGILSALALPAYQSYVIKARVTEAIILADSAKAAVTQNVNNENALTTTACAGVSGLSSPTKN
VASFTCQGAGVLTVVTTNVAGSVTLSLVPSYNSDRPVIWTCRHVSGSASYVPSDCRN

Nucleotide


Download         Length: 414 bp        

>NTDB_id=643496 LPY95_RS05575 WP_005921365.1 1332055..1332468(+) (pilA2) [Xanthomonas citri pv. malvacearum strain CFBP 2012]
ATGAGCCGGGTAAACGGTTTCACCTTGCTCGAGCTAATGATCGTCGTGGCCATCGTCGGGATATTGTCTGCATTGGCCCT
GCCGGCTTATCAAAGTTATGTAATCAAGGCGCGCGTGACCGAAGCTATTATTTTGGCTGACTCTGCCAAAGCTGCGGTGA
CTCAGAATGTCAATAATGAAAATGCTTTGACAACTACTGCATGTGCGGGGGTGAGCGGGCTGTCGTCTCCCACTAAAAAT
GTAGCGTCTTTCACGTGCCAGGGCGCAGGAGTGCTGACTGTCGTTACGACCAACGTTGCAGGCTCGGTAACTCTGTCACT
TGTACCCAGCTACAACTCGGATCGTCCGGTAATCTGGACTTGCCGACATGTTTCTGGATCGGCTAGTTACGTGCCTTCAG
ATTGCCGAAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(36-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

49.265

99.27

0.489
  pilA Ralstonia pseudosolanacearum GMI1000

41.875

100

0.489
  pilA2 Legionella pneumophila strain ERS1305867

48.529

99.27

0.482
  comP Acinetobacter baylyi ADP1

41.611

100

0.453