Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LPY95_RS05590 Genome accession   NZ_CP090564
Coordinates   1334878..1336332 (-) Length   484 a.a.
NCBI ID   WP_269359700.1    Uniprot ID   -
Organism   Xanthomonas citri pv. malvacearum strain CFBP 2012     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1329878..1341332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPY95_RS05565 (LPY95_05570) pilC 1329926..1331185 (-) 1260 WP_033836749.1 type II secretion system F family protein Machinery gene
  LPY95_RS05570 (LPY95_05575) comP 1331530..1331958 (+) 429 WP_269359698.1 pilin Machinery gene
  LPY95_RS05575 pilA2 1332055..1332468 (+) 414 WP_005921365.1 pilin Machinery gene
  LPY95_RS05580 (LPY95_05590) pilB 1332510..1334246 (+) 1737 WP_033836748.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LPY95_RS05585 (LPY95_05595) - 1334524..1334691 (+) 168 WP_033836746.1 hypothetical protein -
  LPY95_RS05590 (LPY95_05600) pilR 1334878..1336332 (-) 1455 WP_269359700.1 sigma-54 dependent transcriptional regulator Regulator
  LPY95_RS05595 (LPY95_05605) - 1336599..1338212 (-) 1614 WP_005921369.1 HAMP domain-containing sensor histidine kinase -
  LPY95_RS05600 (LPY95_05610) sucC 1338444..1339613 (+) 1170 WP_005915812.1 ADP-forming succinate--CoA ligase subunit beta -
  LPY95_RS05605 (LPY95_05615) sucD 1339638..1340513 (+) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  LPY95_RS05610 (LPY95_05620) - 1340687..1340875 (+) 189 WP_269359703.1 hypothetical protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52624.50 Da        Isoelectric Point: 6.8289

>NTDB_id=643498 LPY95_RS05590 WP_269359700.1 1334878..1336332(-) (pilR) [Xanthomonas citri pv. malvacearum strain CFBP 2012]
MGRDLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPLPPPEQASR
LLGDSSAMEILRATISKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDYRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPPGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=643498 LPY95_RS05590 WP_269359700.1 1334878..1336332(-) (pilR) [Xanthomonas citri pv. malvacearum strain CFBP 2012]
GTGGGCCGCGACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACTG
CTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGTTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACTGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGTGCCATGGAAATCCTGCGCGCCACCATCAGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGTGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTACCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACTACCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTAATTGAGCTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGACGCCTTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATTAGCGCTACC
GACCTGCGCCTGCCCGCGCACGGGGGCCACCGGTTGGCCGCCCCCCCAGGAGGCGCCGCGGCCGAACCGCGCGAAGCCGT
CGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.826

95.041

0.597
  pilR Acinetobacter baumannii strain A118

48.922

95.868

0.469