Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | IHC90_RS04465 | Genome accession | NZ_CP090493 |
| Coordinates | 888239..888499 (+) | Length | 86 a.a. |
| NCBI ID | WP_370466065.1 | Uniprot ID | - |
| Organism | Photobacterium damselae subsp. damselae strain AS-15-3942-7 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 883239..893499
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IHC90_RS04455 (IHC90_04455) | hupB | 885527..885799 (+) | 273 | WP_005298263.1 | nucleoid-associated protein HU-beta | - |
| IHC90_RS04460 (IHC90_04460) | ppiD | 886150..888048 (+) | 1899 | WP_068969096.1 | peptidylprolyl isomerase | - |
| IHC90_RS04465 (IHC90_04465) | comEA | 888239..888499 (+) | 261 | WP_370466065.1 | ComEA family DNA-binding protein | Machinery gene |
| IHC90_RS04470 (IHC90_04470) | - | 888584..888922 (-) | 339 | WP_086957111.1 | DUF1971 domain-containing protein | - |
| IHC90_RS04475 (IHC90_04475) | rrtA | 889009..889566 (-) | 558 | WP_106223252.1 | rhombosortase | - |
| IHC90_RS04480 (IHC90_04480) | - | 889576..890193 (+) | 618 | WP_068969098.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| IHC90_RS04485 (IHC90_04485) | - | 890322..891650 (-) | 1329 | WP_106339854.1 | anti-phage deoxyguanosine triphosphatase | - |
| IHC90_RS04490 (IHC90_04490) | yfbR | 891650..892234 (-) | 585 | WP_237035176.1 | 5'-deoxynucleotidase | - |
Sequence
Protein
Download Length: 86 a.a. Molecular weight: 9485.96 Da Isoelectric Point: 5.1351
>NTDB_id=642875 IHC90_RS04465 WP_370466065.1 888239..888499(+) (comEA) [Photobacterium damselae subsp. damselae strain AS-15-3942-7]
MALAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
MALAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
Nucleotide
Download Length: 261 bp
>NTDB_id=642875 IHC90_RS04465 WP_370466065.1 888239..888499(+) (comEA) [Photobacterium damselae subsp. damselae strain AS-15-3942-7]
ATGGCATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAGTACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTGGATAAATTACTGGTTGGTATTGGCCCAGATAAGGCTGAAAATATTATCCAATATC
GTAAGCAGAATGGTAAATTTGCGACCGCAGATGATCTTGCTAAGGTAAAAGGTATTGGTCCCTCTACCGTAGAAAAAAAC
CGCGATCGCATTGAACTGTAG
ATGGCATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAGTACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTGGATAAATTACTGGTTGGTATTGGCCCAGATAAGGCTGAAAATATTATCCAATATC
GTAAGCAGAATGGTAAATTTGCGACCGCAGATGATCTTGCTAAGGTAAAAGGTATTGGTCCCTCTACCGTAGAAAAAAAC
CGCGATCGCATTGAACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
54.118 |
98.837 |
0.535 |
| comEA | Vibrio campbellii strain DS40M4 |
53.488 |
100 |
0.535 |
| comEA | Vibrio cholerae C6706 |
57.353 |
79.07 |
0.453 |
| comEA | Vibrio cholerae strain A1552 |
57.353 |
79.07 |
0.453 |
| comEA | Acinetobacter baylyi ADP1 |
57.812 |
74.419 |
0.43 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.667 |
69.767 |
0.395 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
55.738 |
70.93 |
0.395 |
| comA | Synechocystis sp. PCC 6803 |
43.421 |
88.372 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
51.613 |
72.093 |
0.372 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
50 |
72.093 |
0.36 |
| comEA | Bacillus subtilis subsp. subtilis str. 168 |
49.206 |
73.256 |
0.36 |