Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   LV497_RS05665 Genome accession   NZ_CP090007
Coordinates   1243601..1244098 (+) Length   165 a.a.
NCBI ID   WP_021143466.1    Uniprot ID   A0AB33ZG65
Organism   Streptococcus salivarius strain SALI-10     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1238601..1249098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV497_RS05665 (LV497_05665) comX/sigX 1243601..1244098 (+) 498 WP_021143466.1 sigma factor Regulator
  LV497_RS05670 (LV497_05670) - 1244206..1245048 (-) 843 WP_037605435.1 mechanosensitive ion channel family protein -
  LV497_RS05675 (LV497_05675) tig 1245191..1246474 (+) 1284 WP_002885606.1 trigger factor -
  LV497_RS05680 (LV497_05680) rpoE 1246632..1247207 (+) 576 WP_002885605.1 DNA-directed RNA polymerase subunit delta -
  LV497_RS05685 (LV497_05685) - 1247460..1249064 (+) 1605 WP_022496517.1 CTP synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20023.81 Da        Isoelectric Point: 4.9953

>NTDB_id=640129 LV497_RS05665 WP_021143466.1 1243601..1244098(+) (comX/sigX) [Streptococcus salivarius strain SALI-10]
MEQEVFVHAYEVVRPIVLKASRQYFIQLWDQADMEQEAMMTLYQLLEKFPELKSDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYIEISDIAFCLPNKELDAVDRLVYDEQLNAFRNQLSSEDATKLDRLLAGECFRGRKKMIRELKFWMVDFDP
YNEDD

Nucleotide


Download         Length: 498 bp        

>NTDB_id=640129 LV497_RS05665 WP_021143466.1 1243601..1244098(+) (comX/sigX) [Streptococcus salivarius strain SALI-10]
ATGGAACAAGAAGTTTTTGTTCACGCATATGAGGTTGTTAGGCCGATTGTACTTAAGGCTAGTCGACAATATTTCATCCA
ACTTTGGGACCAAGCTGATATGGAGCAAGAAGCTATGATGACGCTTTATCAGCTTTTAGAAAAGTTTCCTGAATTAAAGT
CTGATGATGATAAGTTACGGCGTTATTTTAAAACGAAATTTAGGAATAGACTTAATGATGAGGTTAGAAGGCAGGAGTCT
GTAAAACGACAAGCCAATAGACAATGTTATATTGAAATTTCAGATATTGCTTTTTGTCTTCCAAATAAAGAGTTAGATGC
TGTTGATAGGCTTGTTTATGATGAGCAGCTTAATGCTTTCCGTAATCAGTTGTCTTCGGAAGATGCTACTAAGTTAGACC
GTTTGCTAGCTGGGGAGTGTTTTAGAGGTCGGAAAAAGATGATTCGAGAGTTAAAATTTTGGATGGTTGATTTTGATCCT
TACAATGAAGATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.