Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | LVB77_RS18205 | Genome accession | NZ_CP089924 |
| Coordinates | 4042537..4042956 (+) | Length | 139 a.a. |
| NCBI ID | WP_232907480.1 | Uniprot ID | - |
| Organism | Lysobacter sp. 5GHs7-4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4037537..4047956
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LVB77_RS18180 (LVB77_18180) | - | 4038490..4039089 (-) | 600 | WP_232907474.1 | class I SAM-dependent methyltransferase | - |
| LVB77_RS18185 (LVB77_18185) | - | 4039091..4040122 (-) | 1032 | WP_232907475.1 | glycosyltransferase | - |
| LVB77_RS18190 (LVB77_18190) | - | 4040119..4040913 (-) | 795 | WP_232907476.1 | glycosyltransferase family A protein | - |
| LVB77_RS18195 (LVB77_18195) | - | 4040925..4041287 (-) | 363 | WP_232907478.1 | EamA family transporter | - |
| LVB77_RS18200 (LVB77_18200) | pilA | 4041761..4042180 (+) | 420 | WP_232907479.1 | pilin | Machinery gene |
| LVB77_RS18205 (LVB77_18205) | pilA2 | 4042537..4042956 (+) | 420 | WP_232907480.1 | pilin | Machinery gene |
| LVB77_RS21310 | pilA2 | 4043235..4043651 (+) | 417 | WP_305068907.1 | pilin | Machinery gene |
| LVB77_RS18220 (LVB77_18220) | - | 4043777..4045720 (+) | 1944 | WP_232907482.1 | hypothetical protein | - |
| LVB77_RS21315 | - | 4045961..4046389 (+) | 429 | WP_305068908.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 14570.57 Da Isoelectric Point: 5.0184
>NTDB_id=639115 LVB77_RS18205 WP_232907480.1 4042537..4042956(+) (pilA2) [Lysobacter sp. 5GHs7-4]
MKNNQQGFTLIELMIVIAILGILIAIALPAYQDYTIRTKNTECLNVAAAAKLAVSETAQDRGSLNLVTSTNTGYSFTASD
YCNRVEVGANGVIGMTTRSTGAAADAVHTLTPAMPAGSGRIEWTCASTAPDSQIPAECR
MKNNQQGFTLIELMIVIAILGILIAIALPAYQDYTIRTKNTECLNVAAAAKLAVSETAQDRGSLNLVTSTNTGYSFTASD
YCNRVEVGANGVIGMTTRSTGAAADAVHTLTPAMPAGSGRIEWTCASTAPDSQIPAECR
Nucleotide
Download Length: 420 bp
>NTDB_id=639115 LVB77_RS18205 WP_232907480.1 4042537..4042956(+) (pilA2) [Lysobacter sp. 5GHs7-4]
ATGAAGAACAACCAGCAAGGCTTCACCCTGATCGAACTGATGATCGTCATCGCGATCCTGGGCATCCTGATCGCCATCGC
TCTGCCGGCGTACCAGGACTACACCATCCGCACCAAGAACACCGAGTGCCTGAACGTCGCCGCGGCCGCCAAGCTGGCCG
TGTCCGAAACCGCCCAGGACCGTGGTTCGCTGAACCTGGTCACCTCGACCAACACCGGCTACTCCTTCACCGCCAGCGAC
TACTGCAACCGCGTTGAAGTCGGCGCCAACGGCGTGATCGGCATGACCACCCGCAGCACCGGCGCCGCCGCTGACGCCGT
GCACACCCTGACCCCGGCCATGCCGGCTGGTTCGGGCCGCATCGAGTGGACCTGCGCCTCGACCGCTCCGGACTCGCAGA
TTCCGGCCGAGTGCCGCTAA
ATGAAGAACAACCAGCAAGGCTTCACCCTGATCGAACTGATGATCGTCATCGCGATCCTGGGCATCCTGATCGCCATCGC
TCTGCCGGCGTACCAGGACTACACCATCCGCACCAAGAACACCGAGTGCCTGAACGTCGCCGCGGCCGCCAAGCTGGCCG
TGTCCGAAACCGCCCAGGACCGTGGTTCGCTGAACCTGGTCACCTCGACCAACACCGGCTACTCCTTCACCGCCAGCGAC
TACTGCAACCGCGTTGAAGTCGGCGCCAACGGCGTGATCGGCATGACCACCCGCAGCACCGGCGCCGCCGCTGACGCCGT
GCACACCCTGACCCCGGCCATGCCGGCTGGTTCGGGCCGCATCGAGTGGACCTGCGCCTCGACCGCTCCGGACTCGCAGA
TTCCGGCCGAGTGCCGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila strain ERS1305867 |
51.095 |
98.561 |
0.504 |
| pilA2 | Legionella pneumophila str. Paris |
51.095 |
98.561 |
0.504 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
41.463 |
100 |
0.489 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
38.65 |
100 |
0.453 |
| comP | Acinetobacter baylyi ADP1 |
41.497 |
100 |
0.439 |
| pilA/pilA1 | Eikenella corrodens VA1 |
37.821 |
100 |
0.424 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.876 |
98.561 |
0.403 |
| pilE | Neisseria gonorrhoeae MS11 |
40.769 |
93.525 |
0.381 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
41.085 |
92.806 |
0.381 |
| pilA | Haemophilus influenzae 86-028NP |
36.429 |
100 |
0.367 |
| pilA | Pseudomonas aeruginosa PAK |
34.459 |
100 |
0.367 |