Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LSO59_RS15555 Genome accession   NZ_CP089038
Coordinates   3327756..3328166 (+) Length   136 a.a.
NCBI ID   WP_373684950.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain RIVM_C011601     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3322756..3333166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO59_RS15535 (LSO59_15515) - 3323015..3324682 (-) 1668 WP_263505579.1 PglL family O-oligosaccharyltransferase -
  LSO59_RS15540 (LSO59_15520) - 3324739..3325185 (-) 447 WP_330221557.1 pilin -
  LSO59_RS15550 (LSO59_15530) - 3325467..3327368 (+) 1902 WP_263505580.1 acyltransferase family protein -
  LSO59_RS15555 (LSO59_15535) pilE 3327756..3328166 (+) 411 WP_373684950.1 pilin Machinery gene
  LSO59_RS15560 (LSO59_15540) - 3328226..3330190 (+) 1965 WP_180111909.1 hypothetical protein -
  LSO59_RS15565 (LSO59_15545) - 3330180..3331031 (+) 852 WP_263505581.1 glycosyltransferase family 2 protein -
  LSO59_RS15570 (LSO59_15550) - 3331035..3331520 (+) 486 WP_218945626.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 13977.98 Da        Isoelectric Point: 9.5386

>NTDB_id=634750 LSO59_RS15555 WP_373684950.1 3327756..3328166(+) (pilE) [Acinetobacter ursingii strain RIVM_C011601]
MQKGFTLIELMIVVAIIGILAAIAIPAYQNYTKRSHVSEGLSLAGGAKTAVTEFYSSQGTWPTANANAGLPTDVSIKGNA
VRSVGVSGSTITITYNTKVEPAATLILQGASTSGGVTWTCTGGSLKAELRPSNCRS

Nucleotide


Download         Length: 411 bp        

>NTDB_id=634750 LSO59_RS15555 WP_373684950.1 3327756..3328166(+) (pilE) [Acinetobacter ursingii strain RIVM_C011601]
ATGCAGAAGGGCTTCACGCTCATCGAGCTTATGATTGTTGTAGCGATCATTGGTATTTTGGCTGCGATTGCGATTCCTGC
TTATCAAAACTATACGAAGCGCTCTCACGTTTCTGAAGGCCTTAGTTTGGCAGGCGGTGCTAAAACTGCTGTTACAGAGT
TTTATTCCTCTCAGGGTACTTGGCCAACTGCTAATGCTAATGCAGGTTTACCAACAGATGTATCGATTAAAGGTAATGCC
GTTAGAAGCGTAGGCGTATCAGGAAGTACTATTACTATTACTTATAATACAAAAGTTGAACCAGCAGCGACTTTAATACT
TCAGGGTGCTTCTACTTCTGGAGGTGTAACCTGGACTTGTACAGGTGGATCTTTAAAAGCAGAATTACGTCCAAGCAACT
GTCGTTCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Pilin (bacterial filament) (Pilin)

(34-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

43.125

100

0.507
  pilA2 Legionella pneumophila str. Paris

50.746

98.529

0.5
  pilA2 Legionella pneumophila strain ERS1305867

50

98.529

0.493
  comP Acinetobacter baylyi ADP1

42.953

100

0.471
  pilA Ralstonia pseudosolanacearum GMI1000

38.994

100

0.456
  pilE Neisseria gonorrhoeae strain FA1090

47.2

91.912

0.434
  pilA Acinetobacter baumannii strain A118

41.429

100

0.426
  pilA Vibrio cholerae C6706

40.141

100

0.419
  pilA Vibrio cholerae strain A1552

40.141

100

0.419
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

40.141

100

0.419
  pilA Haemophilus influenzae 86-028NP

40.299

98.529

0.397
  pilA Haemophilus influenzae Rd KW20

40.299

98.529

0.397
  pilA/pilA1 Eikenella corrodens VA1

35.57

100

0.39