NTDB

Overview

Name	pilE	Type	Machinery gene
Locus tag	LRM40_RS16900	Genome accession	NZ_CP088081
Coordinates	3628088..3628528 (+)	Length	146 a.a.
NCBI ID	WP_151124770.1	Uniprot ID	A0A643F9G6
Organism	Ideonella dechloratans strain CCUG 30977
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3623088..3633528

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRM40_RS16880 (LRM40_16880)	-	3623419..3624165 (+)	747	WP_231067611.1	Stp1/IreP family PP2C-type Ser/Thr phosphatase	-
LRM40_RS16885 (LRM40_16885)	-	3624254..3624883 (+)	630	WP_151124600.1	FHA domain-containing protein	-
LRM40_RS16890 (LRM40_16890)	-	3624891..3627062 (+)	2172	WP_231067612.1	CHASE2 domain-containing protein	-
LRM40_RS16895 (LRM40_16895)	-	3627059..3627835 (+)	777	WP_151124769.1	MBL fold metallo-hydrolase	-
LRM40_RS16900 (LRM40_16900)	pilE	3628088..3628528 (+)	441	WP_151124770.1	pilin	Machinery gene
LRM40_RS16905 (LRM40_16905)	-	3628694..3630493 (+)	1800	WP_151124771.1	PglL family O-oligosaccharyltransferase	-
LRM40_RS16910 (LRM40_16910)	moaC	3630512..3631000 (-)	489	WP_151124772.1	cyclic pyranopterin monophosphate synthase MoaC	-
LRM40_RS16915 (LRM40_16915)	-	3631137..3632723 (+)	1587	WP_231067613.1	M48 family metalloprotease	-
LRM40_RS16920 (LRM40_16920)	-	3632742..3633095 (-)	354	WP_151124806.1	phage holin family protein	-

Sequence

Protein

Download Length: 146 a.a. Molecular weight: 15037.22 Da Isoelectric Point: 4.6505

                                >NTDB_id=632608 LRM40_RS16900 WP_151124770.1 3628088..3628528(+) (pilE) [Ideonella dechloratans strain CCUG 30977]

MKRVQQGFTLIELMIVVAIIGILAAVALPAYQDYLARSQMTEALSLADGQKTAVAEIYGQTGACPTNGNDGVAAATDIKG

QYVAQVEVGGTAPDCTIVATMAATGIAAGLQSKTLTMTMTDNAGSISWTCTSSADQKYLPKSCTHA

Nucleotide

Download Length: 441 bp

                                >NTDB_id=632608 LRM40_RS16900 WP_151124770.1 3628088..3628528(+) (pilE) [Ideonella dechloratans strain CCUG 30977]

ATGAAGCGTGTCCAACAAGGTTTCACCCTCATCGAACTGATGATCGTCGTGGCGATCATCGGCATTCTGGCCGCCGTCGC

CCTGCCGGCTTACCAGGACTATCTGGCCCGTTCCCAAATGACCGAGGCCCTGTCGCTGGCTGACGGCCAAAAGACCGCCG

TGGCCGAGATCTACGGTCAAACGGGTGCCTGCCCCACCAATGGCAACGATGGTGTCGCCGCTGCTACCGACATCAAGGGC

CAGTATGTCGCCCAAGTGGAAGTGGGTGGTACGGCTCCTGACTGCACGATCGTTGCCACGATGGCCGCAACGGGTATTGC

TGCCGGCCTTCAAAGCAAGACCCTGACCATGACCATGACCGACAACGCGGGCTCGATCAGCTGGACCTGCACTTCCAGTG

CCGACCAAAAGTATCTGCCGAAGTCGTGCACACACGCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-28)

Pilin (bacterial filament) (Pilin)

(36-144)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A643F9G6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilE	Neisseria gonorrhoeae strain FA1090	45.963	100	0.507
pilE	Neisseria gonorrhoeae MS11	45.062	100	0.5
pilA2	Legionella pneumophila strain ERS1305867	46.528	98.63	0.459
pilA/pilA1	Eikenella corrodens VA1	42.484	100	0.445
pilA2	Legionella pneumophila str. Paris	45.775	97.26	0.445
pilA	Acinetobacter nosocomialis M2	46.377	94.521	0.438
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	38.323	100	0.438
pilA	Ralstonia pseudosolanacearum GMI1000	38.415	100	0.432
pilA	Acinetobacter baumannii strain A118	40.541	100	0.411
pilA	Pseudomonas aeruginosa PAK	39.216	100	0.411
pilA/pilAI	Pseudomonas stutzeri DSM 10701	40.972	98.63	0.404
comP	Acinetobacter baylyi ADP1	38.095	100	0.384
pilA/pilAII	Pseudomonas stutzeri DSM 10701	34.839	100	0.37

Detailed information NTG0632608