Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   LMK00_RS00660 Genome accession   NZ_CP086395
Coordinates   136340..136645 (+) Length   101 a.a.
NCBI ID   WP_252175526.1    Uniprot ID   A0A9Q8Y2W1
Organism   Lactococcus formosensis strain I4/6O     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 131340..141645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMK00_RS00640 (LMK00_00640) guaB 132449..133930 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  LMK00_RS00645 (LMK00_00645) rpsU 134055..134231 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  LMK00_RS00650 (LMK00_00650) comGA 134419..135363 (+) 945 WP_252175525.1 competence type IV pilus ATPase ComGA Machinery gene
  LMK00_RS00655 (LMK00_00655) comGB 135302..136321 (+) 1020 WP_275692263.1 competence type IV pilus assembly protein ComGB Machinery gene
  LMK00_RS00660 (LMK00_00660) comYC 136340..136645 (+) 306 WP_252175526.1 competence type IV pilus major pilin ComGC Machinery gene
  LMK00_RS12085 comGD 136620..137036 (+) 417 WP_279365405.1 competence type IV pilus minor pilin ComGD Machinery gene
  LMK00_RS12090 comGE 137068..137301 (+) 234 WP_243416060.1 competence type IV pilus minor pilin ComGE -
  LMK00_RS00670 (LMK00_00670) comGF 137282..137722 (+) 441 WP_017368749.1 competence type IV pilus minor pilin ComGF -
  LMK00_RS00675 (LMK00_00675) - 137958..138803 (+) 846 WP_017368750.1 zinc ABC transporter substrate-binding protein -
  LMK00_RS00680 (LMK00_00680) - 138890..139759 (-) 870 WP_252175527.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11247.19 Da        Isoelectric Point: 10.0997

>NTDB_id=624722 LMK00_RS00660 WP_252175526.1 136340..136645(+) (comYC) [Lactococcus formosensis strain I4/6O]
MEKKRFKAFTLIEMLVVLLIISVLLLLFVPNLAKEKKNIQNTGQAAVVKVVEGQAELYQLDKQDGPSLGKLVAGGLITQK
QADSYNDYYTKNPNAKRNVPN

Nucleotide


Download         Length: 306 bp        

>NTDB_id=624722 LMK00_RS00660 WP_252175526.1 136340..136645(+) (comYC) [Lactococcus formosensis strain I4/6O]
ATGGAAAAAAAGAGGTTCAAAGCTTTTACTTTGATTGAAATGCTTGTCGTCTTACTTATTATCAGTGTTTTACTTTTATT
GTTTGTTCCAAACTTGGCTAAAGAAAAGAAGAATATCCAAAATACGGGTCAAGCAGCAGTTGTTAAAGTTGTCGAAGGGC
AAGCCGAACTTTATCAACTTGATAAACAGGATGGTCCAAGTTTAGGGAAACTTGTCGCCGGTGGGTTAATTACACAGAAG
CAAGCCGATAGCTACAATGATTATTATACTAAGAACCCTAATGCAAAACGTAATGTCCCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

63.725

100

0.644
  comYC Streptococcus mutans UA140

67.368

94.059

0.634
  comYC Streptococcus mutans UA159

67.368

94.059

0.634
  comGC/cglC Streptococcus mitis SK321

64.646

98.02

0.634
  comGC Lactococcus lactis subsp. cremoris KW2

61

99.01

0.604
  comGC/cglC Streptococcus pneumoniae D39

59.406

100

0.594
  comGC/cglC Streptococcus pneumoniae Rx1

59.406

100

0.594
  comGC/cglC Streptococcus pneumoniae R6

59.406

100

0.594
  comGC/cglC Streptococcus pneumoniae TIGR4

60.606

98.02

0.594
  comGC/cglC Streptococcus mitis NCTC 12261

63.736

90.099

0.574
  comYC Streptococcus suis isolate S10

59.259

80.198

0.475
  comGC Staphylococcus aureus MW2

51.899

78.218

0.406
  comGC Staphylococcus aureus N315

51.899

78.218

0.406