Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LMK00_RS12085 Genome accession   NZ_CP086395
Coordinates   136620..137036 (+) Length   138 a.a.
NCBI ID   WP_279365405.1    Uniprot ID   -
Organism   Lactococcus formosensis strain I4/6O     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 131620..142036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMK00_RS00640 (LMK00_00640) guaB 132449..133930 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  LMK00_RS00645 (LMK00_00645) rpsU 134055..134231 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  LMK00_RS00650 (LMK00_00650) comGA 134419..135363 (+) 945 WP_252175525.1 competence type IV pilus ATPase ComGA Machinery gene
  LMK00_RS00655 (LMK00_00655) comGB 135302..136321 (+) 1020 WP_275692263.1 competence type IV pilus assembly protein ComGB Machinery gene
  LMK00_RS00660 (LMK00_00660) comYC 136340..136645 (+) 306 WP_252175526.1 competence type IV pilus major pilin ComGC Machinery gene
  LMK00_RS12085 comGD 136620..137036 (+) 417 WP_279365405.1 competence type IV pilus minor pilin ComGD Machinery gene
  LMK00_RS12090 comGE 137068..137301 (+) 234 WP_243416060.1 competence type IV pilus minor pilin ComGE -
  LMK00_RS00670 (LMK00_00670) comGF 137282..137722 (+) 441 WP_017368749.1 competence type IV pilus minor pilin ComGF -
  LMK00_RS00675 (LMK00_00675) - 137958..138803 (+) 846 WP_017368750.1 zinc ABC transporter substrate-binding protein -
  LMK00_RS00680 (LMK00_00680) - 138890..139759 (-) 870 WP_252175527.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15876.49 Da        Isoelectric Point: 10.1981

>NTDB_id=624766 LMK00_RS12085 WP_279365405.1 136620..137036(+) (comGD) [Lactococcus formosensis strain I4/6O]
MQNVMSRIKALTLLESLLVLFLCSFVLFLFSSSVKQSVRIARSEIFILQFERLYKDTQRMAGLKGQRQTLSARNGTLYSQ
EEMLKVPEEAEINDFSITFDQKSGNSSLQRITIFLPYQKKTISYQLEIGSGKYKKSIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=624766 LMK00_RS12085 WP_279365405.1 136620..137036(+) (comGD) [Lactococcus formosensis strain I4/6O]
ATGCAAAACGTAATGTCCCGAATTAAAGCTTTAACTTTACTGGAGAGTTTACTCGTTCTTTTCCTATGCTCTTTTGTTCT
TTTTCTATTTTCAAGTTCGGTGAAACAAAGTGTGAGGATAGCACGTTCAGAGATTTTTATTTTACAATTTGAACGTCTGT
ATAAGGATACCCAGCGCATGGCGGGACTAAAGGGGCAGCGACAGACATTGAGTGCGCGTAATGGCACACTATATAGCCAA
GAAGAAATGTTGAAAGTCCCAGAGGAGGCTGAAATAAATGATTTTTCTATTACTTTTGATCAAAAATCAGGCAATTCGAG
CCTACAAAGAATCACAATATTTCTTCCCTATCAGAAAAAAACGATCTCTTATCAATTGGAAATTGGAAGTGGAAAATATA
AGAAGAGCATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

48.551

100

0.486
  comYD Streptococcus mutans UA140

40.602

96.377

0.391
  comYD Streptococcus mutans UA159

40.602

96.377

0.391
  comGD/cglD Streptococcus mitis SK321

39.535

93.478

0.37
  comGD/cglD Streptococcus pneumoniae TIGR4

38.76

93.478

0.362