Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   NWO26_RS08080 Genome accession   NZ_CP102797
Coordinates   1552885..1553382 (+) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   Q5M6C4
Organism   Streptococcus thermophilus strain ST057-1     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1547885..1558382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWO26_RS08060 - 1549810..1550136 (+) 327 WP_014607875.1 M20/M25/M40 family metallo-hydrolase -
  NWO26_RS08065 - 1550218..1551408 (+) 1191 WP_024704158.1 SAM-dependent methyltransferase -
  NWO26_RS08070 - 1551667..1552131 (-) 465 Protein_1535 transposase family protein -
  NWO26_RS08075 - 1552489..1552593 (+) 105 Protein_1536 IS200/IS605 family transposase -
  NWO26_RS08080 comX 1552885..1553382 (+) 498 WP_002949220.1 sigma factor Regulator
  NWO26_RS08085 - 1553482..1554324 (-) 843 WP_011225338.1 mechanosensitive ion channel family protein -
  NWO26_RS08090 tig 1554465..1555748 (+) 1284 WP_011680653.1 trigger factor -
  NWO26_RS08095 rpoE 1555906..1556481 (+) 576 WP_002949228.1 DNA-directed RNA polymerase subunit delta -
  NWO26_RS08100 - 1556732..1558336 (+) 1605 WP_113870453.1 CTP synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=618328 NWO26_RS08080 WP_002949220.1 1552885..1553382(+) (comX) [Streptococcus thermophilus strain ST057-1]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=618328 NWO26_RS08080 WP_002949220.1 1552885..1553382(+) (comX) [Streptococcus thermophilus strain ST057-1]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCTTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGCTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCTTTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.