Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   LEO80_RS13380 Genome accession   NZ_CP085468
Coordinates   2873879..2875015 (+) Length   378 a.a.
NCBI ID   WP_029314740.1    Uniprot ID   -
Organism   Aeromonas caviae strain 71485     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2868879..2880015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEO80_RS13350 (LEO80_13350) - 2868948..2869328 (-) 381 WP_010675195.1 diacylglycerol kinase -
  LEO80_RS13355 (LEO80_13355) - 2869470..2870537 (+) 1068 WP_041213104.1 3-deoxy-7-phosphoheptulonate synthase -
  LEO80_RS13360 (LEO80_13360) - 2870779..2871552 (-) 774 WP_202016592.1 ATP-binding cassette domain-containing protein -
  LEO80_RS13365 (LEO80_13365) btuC 2871539..2872546 (-) 1008 WP_104453101.1 vitamin B12 ABC transporter permease BtuC -
  LEO80_RS13370 (LEO80_13370) - 2872622..2873353 (-) 732 WP_104453102.1 substrate-binding periplasmic protein -
  LEO80_RS13375 (LEO80_13375) - 2873466..2873822 (+) 357 WP_010675200.1 DMT family protein -
  LEO80_RS13380 (LEO80_13380) pilU 2873879..2875015 (+) 1137 WP_029314740.1 type IVa pilus ATPase TapW Machinery gene
  LEO80_RS13385 (LEO80_13385) - 2875078..2875320 (-) 243 WP_039041210.1 FeoC-like transcriptional regulator -
  LEO80_RS13390 (LEO80_13390) feoB 2875366..2877636 (-) 2271 WP_227262875.1 Fe(2+) transporter permease subunit FeoB -
  LEO80_RS13395 (LEO80_13395) - 2877633..2877860 (-) 228 WP_010675204.1 FeoA family protein -
  LEO80_RS13400 (LEO80_13400) - 2877980..2878309 (+) 330 WP_010675205.1 translation initiation factor -
  LEO80_RS13405 (LEO80_13405) - 2878563..2879120 (+) 558 WP_227262876.1 TMEM165/GDT1 family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42203.27 Da        Isoelectric Point: 6.6000

>NTDB_id=618209 LEO80_RS13380 WP_029314740.1 2873879..2875015(+) (pilU) [Aeromonas caviae strain 71485]
MELRDMLQILAKQDGSDLYLSTGAPPCAKFNGALRPLTQEPLGPGEVARIAYDIMDLEQKQQFEKELEMNLAISLPQIGR
FRVNIFKQRNEVSLVARNIKTEIPRFEDLKLPPVLLDTIMEKRGLVLFVGGTGSGKSTSLAALIDHRNRNSGGHIITIED
PVEFVHRHQKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFSETGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLKAFVSQRLVKTTDGGRRAAVEVMLGTHTVRDLIKRGEFGGLKEIMEKSRALGMVTFDSTL
FDLVVEGVIDEEEAVKNADSQNNLRLKIKLWREKGQIGNSAAASGWSLEPTKDEGDLF

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=618209 LEO80_RS13380 WP_029314740.1 2873879..2875015(+) (pilU) [Aeromonas caviae strain 71485]
ATGGAATTGAGAGACATGCTGCAGATCCTGGCCAAACAGGACGGTTCCGATCTCTATCTCTCCACCGGCGCCCCCCCCTG
TGCCAAGTTCAACGGCGCCCTGCGCCCCCTCACCCAGGAGCCCCTGGGGCCGGGCGAGGTGGCCCGCATCGCCTACGACA
TCATGGATCTCGAGCAGAAACAGCAGTTCGAGAAAGAGCTGGAGATGAACCTCGCCATCTCCCTGCCCCAGATAGGCCGT
TTTCGGGTCAACATCTTCAAGCAGCGCAATGAAGTCTCCCTGGTGGCGCGCAACATCAAGACCGAGATCCCCCGCTTCGA
GGATCTCAAACTCCCTCCGGTGCTCCTCGACACCATCATGGAGAAGCGGGGTCTGGTGCTCTTCGTCGGCGGCACGGGGT
CCGGCAAGTCCACGTCGCTCGCGGCCCTCATCGATCATCGCAACCGCAACAGCGGCGGCCACATCATCACCATCGAGGAT
CCGGTGGAGTTCGTCCATCGCCACCAGAAGAGCATCATCAACCAGCGGGAGGTGGGGGTGGATACCCGCAGCTTCCACGC
GGCCCTGAAGAACACCCTGCGCCAGGCGCCGGACGTCATCCTCATCGGCGAAATCCGCGATCGGGAGACCATGGAGCATG
CCCTCGCCTTCTCGGAGACCGGGCATCTGGCCATCTCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGATCGCATC
ATCAACTTCTTCCCGGAGGAGCGCAGACCCCAGCTGCTCAACGACCTTGGCAACAACCTCAAGGCCTTTGTCTCCCAGCG
GCTGGTGAAGACCACGGACGGCGGACGCCGGGCGGCGGTGGAGGTGATGCTCGGAACCCACACGGTGCGCGATCTCATCA
AGCGCGGCGAGTTTGGCGGCCTCAAGGAGATCATGGAAAAATCCAGGGCCCTTGGCATGGTGACCTTCGACAGTACCCTG
TTCGATCTGGTGGTCGAGGGGGTGATCGACGAGGAGGAGGCAGTGAAGAACGCGGACTCCCAGAACAACCTGCGCCTCAA
GATCAAACTCTGGCGGGAGAAGGGCCAGATTGGCAACAGCGCGGCGGCGAGCGGCTGGAGCCTGGAGCCCACCAAGGACG
AGGGTGACCTCTTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(114-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

54.4

99.206

0.54
  pilU Acinetobacter baylyi ADP1

52.514

94.709

0.497
  pilU Vibrio cholerae strain A1552

49.858

93.386

0.466
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.478

89.683

0.381
  pilT Vibrio cholerae strain A1552

40.456

92.857

0.376
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

40.456

92.857

0.376
  pilT Legionella pneumophila strain ERS1305867

42.216

88.36

0.373
  pilT Legionella pneumophila strain Lp02

42.216

88.36

0.373
  pilT Pseudomonas aeruginosa PAK

40.988

91.005

0.373
  pilT Pseudomonas stutzeri DSM 10701

40.698

91.005

0.37
  pilT Acinetobacter baumannii strain A118

41.317

88.36

0.365
  pilT Acinetobacter nosocomialis M2

41.317

88.36

0.365
  pilT Acinetobacter baumannii D1279779

41.317

88.36

0.365