Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   LEO78_RS13320 Genome accession   NZ_CP084353
Coordinates   2962121..2963260 (+) Length   379 a.a.
NCBI ID   WP_011706550.1    Uniprot ID   A0AAI9Q2R8
Organism   Aeromonas hydrophila strain 71317     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2957121..2968260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEO78_RS13290 (LEO78_13290) - 2957428..2958492 (+) 1065 WP_011706545.1 3-deoxy-7-phosphoheptulonate synthase -
  LEO78_RS13295 (LEO78_13295) aac(6') 2958499..2958957 (+) 459 WP_226031950.1 aminoglycoside 6'-N-acetyltransferase -
  LEO78_RS13300 (LEO78_13300) - 2958979..2959764 (-) 786 WP_226031951.1 ATP-binding cassette domain-containing protein -
  LEO78_RS13305 (LEO78_13305) btuC 2959751..2960758 (-) 1008 WP_226031952.1 vitamin B12 ABC transporter permease BtuC -
  LEO78_RS13310 (LEO78_13310) - 2960859..2961590 (-) 732 WP_139392834.1 ABC transporter substrate-binding protein -
  LEO78_RS13315 (LEO78_13315) - 2961704..2962060 (+) 357 WP_005302630.1 DMT family protein -
  LEO78_RS13320 (LEO78_13320) pilU 2962121..2963260 (+) 1140 WP_011706550.1 type IVa pilus ATPase TapW Machinery gene
  LEO78_RS13325 (LEO78_13325) glgC 2963544..2964815 (+) 1272 WP_135319461.1 glucose-1-phosphate adenylyltransferase -
  LEO78_RS13330 (LEO78_13330) - 2964951..2965430 (+) 480 WP_162517786.1 WbuC family cupin fold metalloprotein -
  LEO78_RS13335 (LEO78_13335) - 2965530..2965772 (-) 243 WP_226031953.1 FeoC-like transcriptional regulator -
  LEO78_RS13340 (LEO78_13340) feoB 2965769..2968042 (-) 2274 WP_226031954.1 Fe(2+) transporter permease subunit FeoB -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 42264.32 Da        Isoelectric Point: 6.4290

>NTDB_id=610807 LEO78_RS13320 WP_011706550.1 2962121..2963260(+) (pilU) [Aeromonas hydrophila strain 71317]
MELRDMLQILAKQDGSDLYLSTGAPPCAKFNGGLRPLSETPLEPGEVARIADAIMDGEQKQQFERELEMNLAISLPQIGR
FRINIFKQRNEVSLVARNIKTEIPRFEDLKLPPVLLDTIMEKRGLVLFVGGTGSGKSTSLAALIDHRNRNSGGHIITIED
PVEFVHRHRKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFSETGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLKAFVSQRLVKTSDGGRRAAVEIMLGTHTIRDMIKRGEFGGLKEVMEKSKALGMVTFDSAL
FDLVVEGVIDEEEAVKNADSANNLRLKIKLWKEKGQIASSSDATGWSLEPTKDEKDDLF

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=610807 LEO78_RS13320 WP_011706550.1 2962121..2963260(+) (pilU) [Aeromonas hydrophila strain 71317]
ATGGAATTGCGAGACATGCTACAGATCCTGGCCAAGCAGGATGGCTCCGACCTCTATCTGTCGACCGGCGCCCCCCCTTG
CGCCAAGTTCAACGGTGGCCTGCGTCCGCTCAGTGAGACGCCGCTCGAACCCGGCGAGGTGGCCAGAATAGCCGACGCCA
TCATGGACGGCGAGCAAAAGCAGCAGTTCGAACGGGAGCTGGAGATGAACCTCGCCATCTCGCTGCCCCAGATCGGCCGC
TTTCGGATCAACATCTTCAAGCAGCGCAACGAAGTGTCGTTGGTGGCGCGCAACATCAAGACCGAGATCCCCCGCTTCGA
GGATCTGAAACTGCCCCCCGTGCTGCTCGACACCATCATGGAGAAGCGCGGCCTGGTGCTGTTCGTCGGCGGTACCGGCT
CTGGCAAGTCCACTTCGCTCGCCGCCCTCATCGACCATCGCAACCGCAACAGCGGCGGCCACATCATCACCATCGAGGAT
CCGGTGGAGTTCGTGCACCGCCACCGCAAGAGCATCATCAACCAGCGCGAGGTGGGGGTGGACACCCGCAGCTTCCACGC
CGCCCTGAAAAACACCCTGCGCCAGGCGCCGGACGTGATCCTCATCGGCGAGATCCGCGATCGCGAGACCATGGAGCATG
CGCTGGCCTTCTCCGAGACCGGCCACCTGGCCATCTCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGATCGCATC
ATCAACTTCTTCCCGGAAGAGCGCCGGCCCCAGCTGCTCAACGACCTTGGCAACAACCTCAAGGCGTTTGTCTCCCAGCG
GCTGGTCAAAACCAGCGACGGTGGCCGCCGAGCAGCCGTGGAGATCATGCTGGGCACCCACACCATTCGCGACATGATCA
AACGCGGTGAGTTTGGTGGCCTCAAGGAGGTGATGGAGAAATCCAAGGCCCTCGGCATGGTCACCTTCGACAGCGCCCTG
TTCGATCTGGTGGTGGAAGGCGTGATCGACGAGGAGGAGGCGGTGAAGAACGCCGACTCGGCCAACAACCTGCGCCTCAA
GATCAAGCTGTGGAAGGAGAAGGGCCAGATCGCGAGCAGCAGCGATGCCACCGGCTGGAGCCTCGAGCCCACCAAGGACG
AGAAAGACGATCTGTTCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(114-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

54.133

98.945

0.536
  pilU Acinetobacter baylyi ADP1

53.521

93.668

0.501
  pilU Vibrio cholerae strain A1552

50.286

92.348

0.464
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.076

93.14

0.383
  pilT Pseudomonas aeruginosa PAK

40.698

90.765

0.369
  pilT Legionella pneumophila strain ERS1305867

41.916

88.127

0.369
  pilT Legionella pneumophila strain Lp02

41.916

88.127

0.369
  pilT Pseudomonas stutzeri DSM 10701

40.116

90.765

0.364
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

41.441

87.863

0.364
  pilT Vibrio cholerae strain A1552

41.441

87.863

0.364
  pilT Acinetobacter baumannii D1279779

41.018

88.127

0.361
  pilT Acinetobacter baumannii strain A118

41.018

88.127

0.361
  pilT Acinetobacter nosocomialis M2

41.018

88.127

0.361