Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | K8O61_RS04555 | Genome accession | NZ_CP083804 |
| Coordinates | 1051285..1051692 (+) | Length | 135 a.a. |
| NCBI ID | WP_237655666.1 | Uniprot ID | - |
| Organism | Xanthomonas cerealis pv. cerealis strain ICMP 16317 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1051757..1071297 | 1051285..1051692 | flank | 65 |
Gene organization within MGE regions
Location: 1051285..1071297
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8O61_RS04555 (K8O61_04570) | pilA/pilAI | 1051285..1051692 (+) | 408 | WP_237655666.1 | pilin | Machinery gene |
| K8O61_RS04565 (K8O61_04580) | - | 1051781..1052167 (+) | 387 | WP_272929860.1 | pilin | - |
| K8O61_RS04570 (K8O61_04585) | - | 1052319..1054067 (+) | 1749 | WP_237655667.1 | hypothetical protein | - |
| K8O61_RS04575 (K8O61_04590) | - | 1054280..1055569 (+) | 1290 | WP_237655668.1 | lipopolysaccharide biosynthesis protein | - |
| K8O61_RS04580 (K8O61_04595) | - | 1055566..1056354 (+) | 789 | WP_237655669.1 | class I SAM-dependent methyltransferase | - |
| K8O61_RS04585 (K8O61_04600) | - | 1056463..1057506 (-) | 1044 | WP_237655670.1 | glycosyltransferase family 4 protein | - |
| K8O61_RS04590 (K8O61_04605) | - | 1057478..1058110 (-) | 633 | WP_237655671.1 | class I SAM-dependent methyltransferase | - |
| K8O61_RS04595 (K8O61_04610) | - | 1058221..1059327 (-) | 1107 | WP_237655672.1 | glycosyltransferase family 4 protein | - |
| K8O61_RS04600 (K8O61_04615) | - | 1059380..1060237 (-) | 858 | WP_237655673.1 | glycosyltransferase family 2 protein | - |
| K8O61_RS04605 (K8O61_04620) | pilB | 1060389..1062125 (+) | 1737 | WP_237655674.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| K8O61_RS04610 (K8O61_04625) | - | 1062135..1062752 (-) | 618 | WP_237655675.1 | Fic/DOC family protein | - |
| K8O61_RS04615 (K8O61_04630) | - | 1062749..1062931 (-) | 183 | WP_003466380.1 | YhfG family protein | - |
| K8O61_RS04620 (K8O61_04635) | pilR | 1063120..1064502 (-) | 1383 | WP_237655676.1 | sigma-54-dependent transcriptional regulator | Regulator |
| K8O61_RS04625 (K8O61_04640) | - | 1064576..1066189 (-) | 1614 | WP_039008924.1 | sensor histidine kinase | - |
| K8O61_RS04630 (K8O61_04645) | sucC | 1066431..1067594 (+) | 1164 | WP_053833739.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| K8O61_RS04635 (K8O61_04650) | sucD | 1067618..1068490 (+) | 873 | WP_009580520.1 | succinate--CoA ligase subunit alpha | - |
| K8O61_RS04640 (K8O61_04655) | - | 1068923..1069372 (+) | 450 | WP_237656120.1 | hypothetical protein | - |
| K8O61_RS04645 (K8O61_04660) | - | 1069441..1071297 (-) | 1857 | WP_155521865.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 135 a.a. Molecular weight: 14368.52 Da Isoelectric Point: 9.2502
>NTDB_id=607988 K8O61_RS04555 WP_237655666.1 1051285..1051692(+) (pilA/pilAI) [Xanthomonas cerealis pv. cerealis strain ICMP 16317]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQNYVRKSQVTAALSDITPGKTQFEVLTNEGKSITSATDIGLTAATSRCSE
IKPTAGDNGNINCKMIGGAGVQGQEIRWTRNASGNWTCSTSAIEKYRPSTCNKAL
MKKQQGFTLIELMIVVAIIAILAAIALPAYQNYVRKSQVTAALSDITPGKTQFEVLTNEGKSITSATDIGLTAATSRCSE
IKPTAGDNGNINCKMIGGAGVQGQEIRWTRNASGNWTCSTSAIEKYRPSTCNKAL
Nucleotide
Download Length: 408 bp
>NTDB_id=607988 K8O61_RS04555 WP_237655666.1 1051285..1051692(+) (pilA/pilAI) [Xanthomonas cerealis pv. cerealis strain ICMP 16317]
ATGAAGAAGCAGCAGGGCTTTACCCTGATCGAACTGATGATCGTCGTCGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGGCCTACCAGAACTACGTTCGCAAGTCGCAGGTCACCGCGGCGCTGTCCGACATCACCCCGGGCAAGACGCAGTTCG
AAGTGCTGACCAACGAAGGCAAGAGCATCACCAGCGCGACCGATATCGGTCTTACTGCAGCGACCAGTCGTTGCAGCGAG
ATTAAGCCGACCGCAGGGGACAACGGCAATATCAATTGCAAAATGATCGGCGGCGCTGGTGTGCAGGGCCAGGAAATTCG
TTGGACACGCAACGCCTCCGGCAACTGGACTTGTTCGACCAGTGCTATCGAGAAGTATCGTCCGAGCACCTGCAACAAGG
CGCTGTAA
ATGAAGAAGCAGCAGGGCTTTACCCTGATCGAACTGATGATCGTCGTCGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGGCCTACCAGAACTACGTTCGCAAGTCGCAGGTCACCGCGGCGCTGTCCGACATCACCCCGGGCAAGACGCAGTTCG
AAGTGCTGACCAACGAAGGCAAGAGCATCACCAGCGCGACCGATATCGGTCTTACTGCAGCGACCAGTCGTTGCAGCGAG
ATTAAGCCGACCGCAGGGGACAACGGCAATATCAATTGCAAAATGATCGGCGGCGCTGGTGTGCAGGGCCAGGAAATTCG
TTGGACACGCAACGCCTCCGGCAACTGGACTTGTTCGACCAGTGCTATCGAGAAGTATCGTCCGAGCACCTGCAACAAGG
CGCTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
53.333 |
100 |
0.533 |
| pilA | Pseudomonas aeruginosa PAK |
42 |
100 |
0.467 |
| pilA | Acinetobacter baumannii strain A118 |
44.853 |
100 |
0.452 |
| pilA | Vibrio cholerae C6706 |
41.259 |
100 |
0.437 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.259 |
100 |
0.437 |
| pilA | Vibrio cholerae strain A1552 |
41.259 |
100 |
0.437 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.105 |
98.519 |
0.415 |
| pilA2 | Legionella pneumophila str. Paris |
40 |
100 |
0.4 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
40 |
100 |
0.4 |
| comP | Acinetobacter baylyi ADP1 |
35.57 |
100 |
0.393 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
38.889 |
93.333 |
0.363 |