Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   K8O61_RS04620 Genome accession   NZ_CP083804
Coordinates   1063120..1064502 (-) Length   460 a.a.
NCBI ID   WP_237655676.1    Uniprot ID   -
Organism   Xanthomonas cerealis pv. cerealis strain ICMP 16317     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1051757..1071297 1063120..1064502 within 0


Gene organization within MGE regions


Location: 1051757..1071297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O61_RS04565 (K8O61_04580) - 1051781..1052167 (+) 387 WP_272929860.1 pilin -
  K8O61_RS04570 (K8O61_04585) - 1052319..1054067 (+) 1749 WP_237655667.1 hypothetical protein -
  K8O61_RS04575 (K8O61_04590) - 1054280..1055569 (+) 1290 WP_237655668.1 lipopolysaccharide biosynthesis protein -
  K8O61_RS04580 (K8O61_04595) - 1055566..1056354 (+) 789 WP_237655669.1 class I SAM-dependent methyltransferase -
  K8O61_RS04585 (K8O61_04600) - 1056463..1057506 (-) 1044 WP_237655670.1 glycosyltransferase family 4 protein -
  K8O61_RS04590 (K8O61_04605) - 1057478..1058110 (-) 633 WP_237655671.1 class I SAM-dependent methyltransferase -
  K8O61_RS04595 (K8O61_04610) - 1058221..1059327 (-) 1107 WP_237655672.1 glycosyltransferase family 4 protein -
  K8O61_RS04600 (K8O61_04615) - 1059380..1060237 (-) 858 WP_237655673.1 glycosyltransferase family 2 protein -
  K8O61_RS04605 (K8O61_04620) pilB 1060389..1062125 (+) 1737 WP_237655674.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K8O61_RS04610 (K8O61_04625) - 1062135..1062752 (-) 618 WP_237655675.1 Fic/DOC family protein -
  K8O61_RS04615 (K8O61_04630) - 1062749..1062931 (-) 183 WP_003466380.1 YhfG family protein -
  K8O61_RS04620 (K8O61_04635) pilR 1063120..1064502 (-) 1383 WP_237655676.1 sigma-54-dependent transcriptional regulator Regulator
  K8O61_RS04625 (K8O61_04640) - 1064576..1066189 (-) 1614 WP_039008924.1 sensor histidine kinase -
  K8O61_RS04630 (K8O61_04645) sucC 1066431..1067594 (+) 1164 WP_053833739.1 ADP-forming succinate--CoA ligase subunit beta -
  K8O61_RS04635 (K8O61_04650) sucD 1067618..1068490 (+) 873 WP_009580520.1 succinate--CoA ligase subunit alpha -
  K8O61_RS04640 (K8O61_04655) - 1068923..1069372 (+) 450 WP_237656120.1 hypothetical protein -
  K8O61_RS04645 (K8O61_04660) - 1069441..1071297 (-) 1857 WP_155521865.1 hypothetical protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49650.02 Da        Isoelectric Point: 6.6434

>NTDB_id=607990 K8O61_RS04620 WP_237655676.1 1063120..1064502(-) (pilR) [Xanthomonas cerealis pv. cerealis strain ICMP 16317]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVRHALELNNSERAAPPPPAQASRLLGTSAAMDVLRATIAKVARSQ
APVYILGESGVGKELVAHTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFSGAHADQAGLFQAAHGGTLFLDEV
AELPLPMQVKLLRAIQEKSVRPVGASTEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLPQL
AAAILARLAKSHGRATPLLSPSALDALNRYPFPGNVRELENILERALAMAEEDQISAADLHLPQPGNSARVAAEAAPALP
PGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=607990 K8O61_RS04620 WP_237655676.1 1063120..1064502(-) (pilR) [Xanthomonas cerealis pv. cerealis strain ICMP 16317]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAGTTGCTGGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCGCGCGAACTGCTGGCGAGCAACCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCAGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTCCACGTGCTGCGCGGCCTGGTCAGGCACGCGCTGGAACTCAACAACAGCGAACGCGCAGCGCCGCCGCCGCCAG
CGCAGGCCAGCCGCCTGCTCGGCACCTCGGCCGCAATGGACGTGCTGCGCGCTACCATCGCCAAGGTCGCGCGCAGCCAG
GCGCCGGTCTACATCCTCGGCGAGTCCGGGGTCGGCAAGGAGCTGGTCGCGCACACCATCCACGAGCAGGGCGCGCGCGC
GGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAGG
GCAGCTTCAGCGGCGCGCATGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTGGACGAAGTG
GCCGAGCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGCATCGAC
CGAAGTGCCGACCGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCTTCCGCC
ACGACCTGTACTACCGCATCAATGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCGCAACTG
GCCGCGGCGATCCTGGCACGGCTGGCCAAGAGCCATGGCCGGGCCACCCCGCTGCTGTCGCCGTCGGCGCTGGACGCGCT
GAACCGCTACCCCTTCCCTGGCAACGTGCGCGAACTGGAGAACATCCTTGAGCGCGCCCTGGCAATGGCCGAAGAGGACC
AGATCAGTGCCGCCGATCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGTCGCGGCCGAAGCCGCGCCCGCGCTGCCG
CCCGGCGTGGTCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAACAGCTCGAGCGCGCCGCGATCCAGAA
GGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCTACAAAC
TGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(417-457)

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(140-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.926

99.348

0.615
  pilR Acinetobacter baumannii strain A118

46.638

100

0.467