Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   K6I41_RS01540 Genome accession   NZ_CP082274
Coordinates   328686..329435 (+) Length   249 a.a.
NCBI ID   WP_250375085.1    Uniprot ID   -
Organism   Acinetobacter sp. AS23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 323686..334435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS01525 (K6I41_01525) ponA 324267..326828 (-) 2562 WP_191900376.1 penicillin-binding protein PBP1a -
  K6I41_RS01530 (K6I41_01530) pilM 326990..328048 (+) 1059 WP_192834141.1 pilus assembly protein PilM Machinery gene
  K6I41_RS01535 (K6I41_01535) pilN 328048..328689 (+) 642 WP_250375084.1 PilN domain-containing protein Machinery gene
  K6I41_RS01540 (K6I41_01540) pilO 328686..329435 (+) 750 WP_250375085.1 type 4a pilus biogenesis protein PilO Machinery gene
  K6I41_RS01545 (K6I41_01545) pilP 329446..329973 (+) 528 WP_042895464.1 pilus assembly protein PilP Machinery gene
  K6I41_RS01550 (K6I41_01550) pilQ 330036..332201 (+) 2166 WP_250375086.1 type IV pilus secretin PilQ family protein Machinery gene
  K6I41_RS01555 (K6I41_01555) aroK 332213..332782 (+) 570 WP_004789808.1 shikimate kinase AroK -
  K6I41_RS01560 (K6I41_01560) aroB 332811..333893 (+) 1083 WP_151988679.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 28119.98 Da        Isoelectric Point: 4.8667

>NTDB_id=600742 K6I41_RS01540 WP_250375085.1 328686..329435(+) (pilO) [Acinetobacter sp. AS23]
MSPDELHELSLEQAPSKKKQITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLRQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVSSGLKFKNIRLEDEVKQEIFIEQP
ITMEATGDYHAFGAFVSSIAALPRIVTMHDFVVEAAPVKDSKSDIPVLNYSIKAKTYRYMGAVENAEHPENNASASVAPV
SSTANTQSK

Nucleotide


Download         Length: 750 bp        

>NTDB_id=600742 K6I41_RS01540 WP_250375085.1 328686..329435(+) (pilO) [Acinetobacter sp. AS23]
ATGAGTCCGGATGAACTTCATGAGTTGTCGTTAGAACAAGCTCCATCTAAGAAAAAGCAGATCACTTTAGAAAAATTTCT
TCAGCAATTTAACACACTAGATATGAACAGTTACGGTAGCTGGCCATTATCTGTGAAAATTACGTGCTGGATTTTTATTT
TCTTTGCTGTGTTGGCTTTAGGATACTTTGTTGTTATTCAGCCAAAGCTTCAAGCAATTGATAATGCGCAGGCACAAGAA
AGTAATTTGTTGAATGAGTTTCGCGAAAAAGATTCAAAATTACGTAACTTGCGGCAATATCAACTTCAACTCCAAGAGAT
GCAAGCAAACTTTAATCAGCAGTTAGAGCAACTGCCAAAAGAAACCGAGATTCCAAGTTTGGTTGAGGACATTAACTTAA
CTGGTGTGAGCTCTGGTCTGAAGTTTAAAAATATTCGTTTAGAAGATGAAGTGAAGCAGGAAATCTTTATTGAACAGCCT
ATTACGATGGAAGCAACTGGCGATTATCACGCTTTTGGTGCTTTTGTTAGTAGTATTGCGGCATTACCACGTATTGTGAC
GATGCATGATTTTGTTGTAGAAGCTGCACCTGTTAAAGATAGTAAGTCGGATATTCCTGTCCTTAATTATTCTATTAAAG
CAAAAACTTATCGCTATATGGGCGCCGTAGAAAATGCTGAACATCCGGAAAACAACGCTTCGGCTTCAGTAGCACCTGTT
TCCTCTACTGCTAATACACAGTCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

81.928

100

0.819
  comO Acinetobacter baylyi ADP1

68.952

99.598

0.687