Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | K5Q02_RS00720 | Genome accession | NZ_CP081942 |
| Coordinates | 166477..166896 (-) | Length | 139 a.a. |
| NCBI ID | WP_225835412.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. MM211 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 161477..171896
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5Q02_RS00705 (K5Q02_00700) | - | 161858..163441 (+) | 1584 | WP_225835400.1 | peptide chain release factor 3 | - |
| K5Q02_RS00710 (K5Q02_00705) | tfpZ | 163803..164537 (-) | 735 | WP_225835402.1 | TfpX/TfpZ family type IV pilin accessory protein | - |
| K5Q02_RS00715 (K5Q02_00710) | - | 165025..166398 (-) | 1374 | WP_225835405.1 | O-antigen ligase family protein | - |
| K5Q02_RS00720 (K5Q02_00715) | pilA/pilAI | 166477..166896 (-) | 420 | WP_225835412.1 | pilin | Machinery gene |
| K5Q02_RS00725 (K5Q02_00720) | pilB | 167155..168861 (+) | 1707 | WP_225835414.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| K5Q02_RS00730 (K5Q02_00725) | pilC | 168864..170084 (+) | 1221 | WP_225835416.1 | type II secretion system F family protein | Machinery gene |
| K5Q02_RS00735 (K5Q02_00730) | pilD | 170088..170960 (+) | 873 | WP_225835417.1 | A24 family peptidase | Machinery gene |
| K5Q02_RS00740 (K5Q02_00735) | coaE | 171111..171719 (+) | 609 | WP_225835418.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 14521.69 Da Isoelectric Point: 8.4733
>NTDB_id=598544 K5Q02_RS00720 WP_225835412.1 166477..166896(-) (pilA/pilAI) [Pseudomonas sp. MM211]
MKAQMQKGFTLIELMIVVAIIGILAAVAIPAYQDYTVRSNAAAALAEVTPGKVGFEQAINEGKTPSLTSTDQGYIGISSS
TSYCDVTLTTTAPFAITCATKGGNATNFNTKNIVLTRTANGVWGCTSTLDVKYKPGKCS
MKAQMQKGFTLIELMIVVAIIGILAAVAIPAYQDYTVRSNAAAALAEVTPGKVGFEQAINEGKTPSLTSTDQGYIGISSS
TSYCDVTLTTTAPFAITCATKGGNATNFNTKNIVLTRTANGVWGCTSTLDVKYKPGKCS
Nucleotide
Download Length: 420 bp
>NTDB_id=598544 K5Q02_RS00720 WP_225835412.1 166477..166896(-) (pilA/pilAI) [Pseudomonas sp. MM211]
ATGAAAGCTCAAATGCAAAAAGGTTTTACCCTGATCGAACTGATGATCGTTGTTGCGATCATCGGCATCCTGGCTGCTGT
TGCAATCCCTGCCTACCAAGATTATACCGTTCGCTCGAACGCAGCTGCTGCTCTGGCCGAAGTTACTCCTGGTAAAGTAG
GCTTTGAGCAAGCTATCAATGAAGGTAAGACGCCGTCGTTGACCTCCACCGATCAAGGTTACATTGGTATTTCCTCCTCT
ACCTCGTACTGCGATGTTACTCTGACTACAACTGCTCCGTTTGCGATTACTTGCGCCACTAAAGGTGGTAATGCTACCAA
CTTTAATACAAAGAACATTGTTCTGACTCGTACCGCAAATGGTGTGTGGGGCTGTACCAGTACTTTGGATGTCAAGTACA
AACCAGGCAAGTGCTCTTGA
ATGAAAGCTCAAATGCAAAAAGGTTTTACCCTGATCGAACTGATGATCGTTGTTGCGATCATCGGCATCCTGGCTGCTGT
TGCAATCCCTGCCTACCAAGATTATACCGTTCGCTCGAACGCAGCTGCTGCTCTGGCCGAAGTTACTCCTGGTAAAGTAG
GCTTTGAGCAAGCTATCAATGAAGGTAAGACGCCGTCGTTGACCTCCACCGATCAAGGTTACATTGGTATTTCCTCCTCT
ACCTCGTACTGCGATGTTACTCTGACTACAACTGCTCCGTTTGCGATTACTTGCGCCACTAAAGGTGGTAATGCTACCAA
CTTTAATACAAAGAACATTGTTCTGACTCGTACCGCAAATGGTGTGTGGGGCTGTACCAGTACTTTGGATGTCAAGTACA
AACCAGGCAAGTGCTCTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
79.856 |
100 |
0.799 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
65.152 |
94.964 |
0.619 |
| pilA | Pseudomonas aeruginosa PAK |
44.231 |
100 |
0.496 |
| comP | Acinetobacter baylyi ADP1 |
43.662 |
100 |
0.446 |
| pilA | Acinetobacter baumannii strain A118 |
44.526 |
98.561 |
0.439 |
| pilA2 | Legionella pneumophila str. Paris |
43.165 |
100 |
0.432 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
42.446 |
100 |
0.424 |
| pilA | Vibrio cholerae C6706 |
39.161 |
100 |
0.403 |
| pilA | Vibrio cholerae strain A1552 |
39.161 |
100 |
0.403 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
39.161 |
100 |
0.403 |