Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K5Q02_RS00730 Genome accession   NZ_CP081942
Coordinates   168864..170084 (+) Length   406 a.a.
NCBI ID   WP_225835416.1    Uniprot ID   -
Organism   Pseudomonas sp. MM211     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 163864..175084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5Q02_RS00715 (K5Q02_00710) - 165025..166398 (-) 1374 WP_225835405.1 O-antigen ligase family protein -
  K5Q02_RS00720 (K5Q02_00715) pilA/pilAI 166477..166896 (-) 420 WP_225835412.1 pilin Machinery gene
  K5Q02_RS00725 (K5Q02_00720) pilB 167155..168861 (+) 1707 WP_225835414.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K5Q02_RS00730 (K5Q02_00725) pilC 168864..170084 (+) 1221 WP_225835416.1 type II secretion system F family protein Machinery gene
  K5Q02_RS00735 (K5Q02_00730) pilD 170088..170960 (+) 873 WP_225835417.1 A24 family peptidase Machinery gene
  K5Q02_RS00740 (K5Q02_00735) coaE 171111..171719 (+) 609 WP_225835418.1 dephospho-CoA kinase -
  K5Q02_RS00745 (K5Q02_00740) yacG 171716..171916 (+) 201 WP_225835420.1 DNA gyrase inhibitor YacG -
  K5Q02_RS00750 (K5Q02_00745) - 171972..172478 (+) 507 WP_225835422.1 MOSC domain-containing protein -
  K5Q02_RS00755 (K5Q02_00750) - 172733..174031 (+) 1299 WP_225835424.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 43764.43 Da        Isoelectric Point: 9.9076

>NTDB_id=598546 K5Q02_RS00730 WP_225835416.1 168864..170084(+) (pilC) [Pseudomonas sp. MM211]
MAAAKAPKTSTFIWEGKDRRGSSIKGELNGQNPALVKAQLRKQGINPTKVRKKGISLSGSGKKVKPLDIALFARQMATMM
KAGVPLLQSFDIIADGVEKPSMRKLVDELKQHVAAGNSFAAALRTKPEYFDDLFCNLVEAGEQSGALETLLDRVATYKEK
TEALKAKIKKAMNYPIAVVVVAVIVTCILLIKVVPQFQEVFAGFGAELPAFTLFVIGISEALQQWWFIVLIIFVAAGYAF
MQAKQRSEKFRDALDRTVLKAPIVGNIVYKAAVARYARTLSTTFAAGVPLVEALDSVAGATGNVVFRNAVNKIKQDVTSG
MQLNFSMRSTNAFPAMAVQMTAIGEESGALDSMLDKVASYYEAEVDNAVDGLTALMEPLIMSVLGVLVGGLIIAMYLPIF
QLGGVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=598546 K5Q02_RS00730 WP_225835416.1 168864..170084(+) (pilC) [Pseudomonas sp. MM211]
ATGGCAGCAGCAAAAGCGCCCAAGACCAGCACCTTTATCTGGGAAGGTAAGGATCGTAGGGGCAGCAGCATCAAAGGCGA
ACTCAACGGGCAAAACCCTGCCTTGGTCAAGGCGCAATTGCGCAAGCAAGGCATCAACCCAACCAAAGTGCGTAAGAAGG
GCATCAGCCTTAGCGGTAGCGGTAAGAAGGTCAAACCGCTGGATATTGCTCTGTTCGCAAGACAGATGGCCACCATGATG
AAGGCCGGCGTACCGCTGCTTCAGTCGTTCGACATTATCGCCGATGGGGTTGAAAAACCCAGCATGCGTAAGCTGGTAGA
TGAGCTGAAGCAACATGTTGCTGCGGGTAATAGCTTCGCCGCAGCACTGCGGACAAAACCGGAATATTTCGACGACCTGT
TCTGCAATCTCGTCGAGGCAGGTGAACAGTCCGGTGCACTGGAAACATTGCTTGATCGGGTCGCCACGTACAAGGAAAAG
ACAGAAGCACTCAAGGCAAAAATCAAAAAGGCAATGAACTATCCAATCGCAGTGGTTGTGGTTGCAGTAATTGTCACCTG
TATCTTGCTGATTAAAGTGGTGCCTCAATTCCAGGAAGTTTTTGCAGGCTTTGGAGCTGAGCTACCGGCCTTCACACTGT
TTGTTATCGGTATATCTGAGGCACTACAGCAGTGGTGGTTCATCGTCCTGATAATTTTTGTAGCTGCTGGGTACGCATTC
ATGCAGGCCAAACAACGCTCGGAGAAATTTCGAGATGCACTAGATCGCACCGTACTGAAGGCGCCCATCGTAGGCAATAT
CGTTTACAAGGCTGCAGTCGCACGGTATGCGAGAACACTCTCTACCACCTTCGCAGCCGGTGTACCTCTGGTAGAGGCCT
TAGATTCGGTAGCAGGCGCCACGGGTAACGTTGTATTTCGAAACGCCGTCAACAAGATTAAACAGGATGTCACCAGCGGA
ATGCAGCTGAATTTTTCGATGCGCTCGACTAACGCGTTTCCGGCCATGGCCGTGCAAATGACGGCAATTGGCGAGGAATC
TGGCGCTCTCGACAGCATGCTCGACAAGGTGGCCAGTTACTACGAGGCGGAAGTGGATAATGCGGTGGATGGCCTTACGG
CACTTATGGAGCCGCTAATCATGTCGGTTCTGGGCGTCCTGGTTGGCGGCCTCATCATCGCTATGTACCTACCAATTTTC
CAATTGGGTGGCGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

79.455

99.507

0.791
  pilC Acinetobacter baumannii D1279779

62.5

100

0.628
  pilC Acinetobacter baylyi ADP1

61.765

100

0.621
  pilC Legionella pneumophila strain ERS1305867

52.239

99.015

0.517
  pilG Neisseria gonorrhoeae MS11

44.527

99.015

0.441
  pilG Neisseria meningitidis 44/76-A

44.527

99.015

0.441
  pilC Vibrio cholerae strain A1552

41.278

100

0.414
  pilC Vibrio campbellii strain DS40M4

40.299

99.015

0.399
  pilC Thermus thermophilus HB27

37.871

99.507

0.377