Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   K5Q02_RS00735 Genome accession   NZ_CP081942
Coordinates   170088..170960 (+) Length   290 a.a.
NCBI ID   WP_225835417.1    Uniprot ID   -
Organism   Pseudomonas sp. MM211     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 165088..175960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5Q02_RS00720 (K5Q02_00715) pilA/pilAI 166477..166896 (-) 420 WP_225835412.1 pilin Machinery gene
  K5Q02_RS00725 (K5Q02_00720) pilB 167155..168861 (+) 1707 WP_225835414.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K5Q02_RS00730 (K5Q02_00725) pilC 168864..170084 (+) 1221 WP_225835416.1 type II secretion system F family protein Machinery gene
  K5Q02_RS00735 (K5Q02_00730) pilD 170088..170960 (+) 873 WP_225835417.1 A24 family peptidase Machinery gene
  K5Q02_RS00740 (K5Q02_00735) coaE 171111..171719 (+) 609 WP_225835418.1 dephospho-CoA kinase -
  K5Q02_RS00745 (K5Q02_00740) yacG 171716..171916 (+) 201 WP_225835420.1 DNA gyrase inhibitor YacG -
  K5Q02_RS00750 (K5Q02_00745) - 171972..172478 (+) 507 WP_225835422.1 MOSC domain-containing protein -
  K5Q02_RS00755 (K5Q02_00750) - 172733..174031 (+) 1299 WP_225835424.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 31935.79 Da        Isoelectric Point: 6.8836

>NTDB_id=598547 K5Q02_RS00735 WP_225835417.1 170088..170960(+) (pilD) [Pseudomonas sp. MM211]
MPVIDFLAGNTPAFVFCSLAVGLLVGSFLNVVIHRLPKMMHRDWRTQAREVLELPAEPEGETYNLVLPHSSCPHCKHEIR
PWENIPVISYLFLRGKCSGCKAKISLRYPLVELSCGLLSAYSAWHFGFSWQAGGMLLLAWGLLAMSLIDADHQLLPDALV
LPLLWLGLIVNHFGLFTSLEDALWGAVAGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSVVG
AVLGVILLCMRDANTSTPIPFGPYLAIAGFIALLWGKQITDGYLQFAGFN

Nucleotide


Download         Length: 873 bp        

>NTDB_id=598547 K5Q02_RS00735 WP_225835417.1 170088..170960(+) (pilD) [Pseudomonas sp. MM211]
ATGCCCGTAATCGACTTCCTGGCCGGCAATACGCCAGCCTTTGTTTTCTGCTCGCTAGCTGTCGGCTTGCTGGTCGGCAG
TTTTCTCAACGTCGTTATCCACCGTCTGCCCAAAATGATGCACCGTGACTGGCGCACGCAAGCGCGTGAAGTACTGGAGC
TGCCGGCGGAGCCGGAGGGCGAAACCTACAATCTGGTACTCCCCCACTCCAGTTGCCCACACTGCAAGCACGAAATTCGC
CCCTGGGAGAATATCCCGGTTATCAGCTATCTCTTTCTGCGTGGCAAGTGCTCGGGCTGCAAGGCGAAAATCAGCCTGCG
CTACCCACTGGTCGAGCTAAGCTGCGGACTGCTATCGGCTTACAGCGCCTGGCATTTTGGCTTTAGCTGGCAAGCAGGCG
GCATGCTGCTACTGGCCTGGGGGTTGCTGGCCATGAGCCTGATCGATGCGGATCATCAGCTCTTACCCGACGCCTTGGTG
CTGCCACTGCTGTGGCTGGGCTTGATCGTCAACCACTTTGGTCTGTTCACCAGCCTTGAAGATGCCCTGTGGGGCGCAGT
AGCTGGCTACCTGAGCTTGTGGTCGGTGTTTTGGCTATTCAAGCTGGTTACCGGCAAGGAAGGCATGGGTTACGGCGATT
TCAAGTTGCTGGCCATGCTCGGCGCCTGGGGTGGCTGGCAGATTTTGCCGCTGACTATTTTACTGTCTTCGGTGGTCGGC
GCAGTGCTGGGTGTAATACTGCTGTGCATGCGCGATGCGAATACCAGCACGCCTATTCCCTTCGGCCCTTACCTGGCCAT
TGCAGGGTTTATCGCGCTGCTCTGGGGCAAGCAGATCACCGATGGCTATTTGCAGTTTGCAGGGTTCAATTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(136-245)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

56.061

91.034

0.51
  pilD Vibrio campbellii strain DS40M4

53.846

94.138

0.507
  pilD Acinetobacter baumannii D1279779

50.704

97.931

0.497
  pilD Acinetobacter nosocomialis M2

50

97.931

0.49
  pilD Neisseria gonorrhoeae MS11

50

90.345

0.452