Detailed information NTG0592624

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: K0H60_RS06405
• Genome accession: NZ_CP080412
• Coordinates: 1439822..1440934 (+)
• Length: 370 a.a.
• NCBI ID: WP_011621983.1
• Uniprot ID: -
• Organism: Shewanella mangrovisoli strain FJAT-51754
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1434822..1445934

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K0H60_RS06375 (K0H60_06375)	-	1435566..1436000 (-)	435	WP_011621977.1	DUF4426 domain-containing protein	-
K0H60_RS06380 (K0H60_06380)	yggU	1436069..1436359 (-)	291	WP_011621978.1	DUF167 family protein YggU	-
K0H60_RS06385 (K0H60_06385)	-	1436359..1436907 (-)	549	WP_011716279.1	YggT family protein	-
K0H60_RS06390 (K0H60_06390)	proC	1436983..1437801 (-)	819	WP_220057618.1	pyrroline-5-carboxylate reductase	-
K0H60_RS06395 (K0H60_06395)	-	1438023..1438739 (-)	717	WP_220057619.1	YggS family pyridoxal phosphate-dependent enzyme	-
K0H60_RS06400 (K0H60_06400)	pilT	1438775..1439812 (+)	1038	WP_011716282.1	type IV pilus twitching motility protein PilT	Machinery gene
K0H60_RS06405 (K0H60_06405)	pilU	1439822..1440934 (+)	1113	WP_011621983.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
K0H60_RS06410 (K0H60_06410)	-	1441110..1441643 (+)	534	WP_086904528.1	glutathione peroxidase	-
K0H60_RS06415 (K0H60_06415)	hemH	1441713..1442696 (+)	984	WP_220057620.1	ferrochelatase	-
K0H60_RS06420 (K0H60_06420)	ruvX	1442758..1443183 (-)	426	WP_011621986.1	Holliday junction resolvase RuvX	-
K0H60_RS06425 (K0H60_06425)	-	1443214..1443777 (-)	564	WP_011621987.1	YqgE/AlgH family protein	-
K0H60_RS06430 (K0H60_06430)	yciH	1443846..1444175 (-)	330	WP_023266511.1	stress response translation initiation inhibitor YciH	-
K0H60_RS06435 (K0H60_06435)	-	1444325..1444639 (-)	315	WP_011716287.1	hypothetical protein	-
K0H60_RS06440 (K0H60_06440)	-	1444819..1445379 (+)	561	WP_011621990.1	DUF4136 domain-containing protein	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 41187.42 Da
• Isoelectric Point: 6.3725

>NTDB_id=592624 K0H60_RS06405 WP_011621983.1 1439822..1440934(+) (pilU) [Shewanella mangrovisoli strain FJAT-51754]
MDVRPFLKVMVERKASDLFITAGFPPSAKIDGELRPLAESAFTPAQSLDFVESVMTEAQKKEFHTTRECNFAFAVKDLGR
FRVSAFWQRESPGCVMRRIETKIPEVEDLKLPPILKDLVMSKRGLIIMVGGTGTGKSTSLAALVGYRNAHARGHILTIED
PVEFVHDHRKSIITQREVGIDTESFDAALKSSLRQAPDVILIGEIRTQETMEFALSFAETGHLCMATLHANNANQALDRI
MHLVPESKHQQLLFDLSLNLRGIVAQQLVPKVDGTGRRAAIEVLINTPRVASLIAKNELHLLKETMAKSNEQGMQTFDQA
LLQLYIDGEISYADALHHADSPNDLRLMIKLQNKEPTSSSFMEGVTLDMD

Nucleotide

• Length: 1113 bp

>NTDB_id=592624 K0H60_RS06405 WP_011621983.1 1439822..1440934(+) (pilU) [Shewanella mangrovisoli strain FJAT-51754]
ATGGATGTCCGTCCGTTTTTAAAAGTCATGGTGGAGCGTAAAGCCTCGGACTTGTTTATTACCGCAGGTTTTCCGCCGAG
CGCCAAAATCGATGGTGAGTTACGCCCATTAGCCGAGAGTGCCTTCACGCCCGCGCAGTCTTTGGATTTTGTCGAGTCCG
TAATGACTGAGGCGCAAAAGAAGGAGTTTCACACTACTCGCGAGTGTAACTTTGCTTTTGCGGTGAAGGATTTAGGGCGT
TTTCGCGTCAGCGCATTCTGGCAGCGTGAATCTCCTGGATGCGTTATGCGCCGGATTGAGACCAAAATCCCTGAGGTAGA
GGACTTAAAACTGCCACCGATTTTAAAAGATCTGGTGATGAGTAAACGGGGTCTTATCATCATGGTTGGGGGAACGGGAA
CCGGTAAGTCGACCTCCTTGGCGGCGTTAGTGGGTTACCGTAATGCCCATGCCCGTGGTCATATCCTCACCATTGAAGAT
CCGGTGGAATTTGTGCATGACCATCGCAAAAGCATCATCACTCAACGCGAAGTGGGCATAGATACAGAATCCTTTGACGC
GGCGCTGAAGAGTTCGCTGCGTCAGGCGCCCGATGTGATTTTGATTGGTGAGATCCGTACCCAAGAAACCATGGAGTTTG
CGCTCTCCTTCGCCGAAACGGGTCACCTCTGTATGGCTACCCTGCACGCAAACAACGCTAACCAAGCGTTAGACCGGATC
ATGCACTTAGTGCCTGAGAGTAAACACCAGCAGTTGCTATTCGACTTGTCACTCAACCTGCGCGGCATTGTAGCGCAGCA
ACTGGTGCCTAAAGTCGATGGCACAGGACGACGGGCGGCGATTGAAGTCTTGATCAATACGCCACGTGTCGCGAGCTTGA
TTGCTAAAAACGAGCTGCATTTGCTAAAAGAAACCATGGCTAAATCGAATGAGCAGGGTATGCAGACCTTCGACCAAGCC
TTGCTGCAACTTTATATCGATGGGGAAATCAGCTATGCCGATGCGCTTCACCATGCTGACTCGCCAAACGACTTGCGTTT
AATGATCAAACTGCAAAATAAAGAGCCTACCAGTTCAAGCTTTATGGAAGGCGTGACCTTGGATATGGATTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (113-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	60.377	100	0.605
pilU	Vibrio cholerae strain A1552	59.189	100	0.592
pilU	Acinetobacter baylyi ADP1	60.511	95.135	0.576
pilT	Vibrio cholerae O1 biovar El Tor strain E7946	43.333	89.189	0.386
pilT	Vibrio cholerae strain A1552	43.333	89.189	0.386
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	40.87	93.243	0.381
pilT	Acinetobacter nosocomialis M2	39.766	92.432	0.368
pilT	Acinetobacter baumannii D1279779	39.766	92.432	0.368
pilT	Acinetobacter baumannii strain A118	39.766	92.432	0.368
pilT	Acinetobacter baylyi ADP1	39.474	92.432	0.365
pilT	Legionella pneumophila strain Lp02	41.358	87.568	0.362
pilT	Legionella pneumophila strain ERS1305867	41.358	87.568	0.362