Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | KEC60_RS04310 | Genome accession | NZ_CP079237 |
| Coordinates | 854645..854905 (+) | Length | 86 a.a. |
| NCBI ID | WP_370467799.1 | Uniprot ID | - |
| Organism | Photobacterium damselae strain Pdd1608 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 849645..859905
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KEC60_RS04300 (KEC60_04295) | hupB | 851932..852204 (+) | 273 | WP_005298263.1 | nucleoid-associated protein HU-beta | - |
| KEC60_RS04305 (KEC60_04300) | ppiD | 852556..854455 (+) | 1900 | Protein_740 | peptidylprolyl isomerase | - |
| KEC60_RS04310 (KEC60_04305) | comEA | 854645..854905 (+) | 261 | WP_370467799.1 | ComEA family DNA-binding protein | Machinery gene |
| KEC60_RS04315 (KEC60_04310) | - | 854990..855328 (-) | 339 | WP_068947005.1 | DUF1971 domain-containing protein | - |
| KEC60_RS04320 (KEC60_04315) | rrtA | 855415..855972 (-) | 558 | WP_284649431.1 | rhombosortase | - |
| KEC60_RS04325 (KEC60_04320) | - | 855982..856599 (+) | 618 | WP_068947007.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| KEC60_RS04330 (KEC60_04325) | - | 856652..856963 (-) | 312 | WP_284649432.1 | hypothetical protein | - |
| KEC60_RS04335 (KEC60_04330) | - | 856944..858272 (-) | 1329 | WP_284649433.1 | anti-phage deoxyguanosine triphosphatase | - |
| KEC60_RS04340 (KEC60_04335) | yfbR | 858272..858856 (-) | 585 | WP_284649434.1 | 5'-deoxynucleotidase | - |
Sequence
Protein
Download Length: 86 a.a. Molecular weight: 9515.99 Da Isoelectric Point: 5.1351
>NTDB_id=588364 KEC60_RS04310 WP_370467799.1 854645..854905(+) (comEA) [Photobacterium damselae strain Pdd1608]
MALAMLLTPLAYATKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
MALAMLLTPLAYATKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
Nucleotide
Download Length: 261 bp
>NTDB_id=588364 KEC60_RS04310 WP_370467799.1 854645..854905(+) (comEA) [Photobacterium damselae strain Pdd1608]
ATGGCATTAGCAATGCTACTTACCCCGTTAGCTTATGCAACGAAAGATAAGTACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTAGATAAGTTACTGGTTGGAATCGGCCCAGATAAGGCTGAAAATATTATTCAATATC
GTAAGCAGAATGGTAAATTTGCGACCGCGGATGATCTTGCTAAGGTAAAAGGCATTGGTCCCTCAACTGTAGAAAAAAAC
CGCGATCGCATTGAACTGTAG
ATGGCATTAGCAATGCTACTTACCCCGTTAGCTTATGCAACGAAAGATAAGTACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTAGATAAGTTACTGGTTGGAATCGGCCCAGATAAGGCTGAAAATATTATTCAATATC
GTAAGCAGAATGGTAAATTTGCGACCGCGGATGATCTTGCTAAGGTAAAAGGCATTGGTCCCTCAACTGTAGAAAAAAAC
CGCGATCGCATTGAACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio campbellii strain DS40M4 |
55.814 |
100 |
0.558 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
52.941 |
98.837 |
0.523 |
| comEA | Vibrio cholerae C6706 |
57.353 |
79.07 |
0.453 |
| comEA | Vibrio cholerae strain A1552 |
57.353 |
79.07 |
0.453 |
| comEA | Acinetobacter baylyi ADP1 |
57.812 |
74.419 |
0.43 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.667 |
69.767 |
0.395 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
55.738 |
70.93 |
0.395 |
| comA | Synechocystis sp. PCC 6803 |
44.737 |
88.372 |
0.395 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
51.613 |
72.093 |
0.372 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
50 |
72.093 |
0.36 |
| comEA | Bacillus subtilis subsp. subtilis str. 168 |
49.206 |
73.256 |
0.36 |