Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   KVP03_RS00320 Genome accession   NZ_CP077959
Coordinates   60135..60614 (-) Length   159 a.a.
NCBI ID   WP_126437050.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ_14-145     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 60898..63613 60135..60614 flank 284


Gene organization within MGE regions


Location: 60135..63613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KVP03_RS00320 (KVP03_00320) comX/sigX/comX2/sigX2 60135..60614 (-) 480 WP_126437050.1 competence protein ComX Regulator
  KVP03_RS00330 (KVP03_00330) - 60898..62016 (-) 1119 WP_079993910.1 ISAs1-like element ISSeq10 family transposase -
  KVP03_RS00335 (KVP03_00335) - 62216..63613 (+) 1398 WP_111692170.1 ISNCY-like element ISSeq2 family transposase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 19180.12 Da        Isoelectric Point: 8.2737

>NTDB_id=585629 KVP03_RS00320 WP_126437050.1 60135..60614(-) (comX/sigX/comX2/sigX2) [Streptococcus equi subsp. zooepidemicus strain SEZ_14-145]
MTDDLVRLFDKIKPIIMKLRRHYYIQLWELDDWLQEGRFILYRLLVTYPELIEDEEKLYRYFKTKFSSYLKDVLRQQESQ
KRRFHKMAYEEIGSVGHAIPAGGLGVDDYVAYQLIVKEVEERLTESELSQFRALIRGERFEGRRALLRKIGPYFQDFTG

Nucleotide


Download         Length: 480 bp        

>NTDB_id=585629 KVP03_RS00320 WP_126437050.1 60135..60614(-) (comX/sigX/comX2/sigX2) [Streptococcus equi subsp. zooepidemicus strain SEZ_14-145]
ATGACTGATGATTTAGTGAGGTTATTTGATAAGATCAAGCCTATTATTATGAAGCTAAGACGGCATTATTATATTCAGCT
GTGGGAGCTAGATGATTGGTTACAGGAGGGGCGGTTCATCTTGTATCGGTTATTGGTCACTTATCCAGAATTGATAGAGG
ATGAGGAGAAGTTGTATCGTTATTTTAAGACCAAGTTTTCCTCTTATTTGAAGGACGTGTTGCGGCAGCAGGAGAGTCAG
AAGCGTCGGTTTCATAAGATGGCTTATGAGGAGATTGGGTCGGTAGGCCATGCGATACCAGCAGGTGGTTTGGGAGTAGA
TGATTATGTGGCTTATCAGTTGATTGTGAAGGAGGTTGAGGAGCGATTGACAGAGAGTGAGCTGTCGCAGTTTCGGGCTT
TGATCAGGGGAGAGCGGTTTGAGGGGAGACGGGCCTTGCTTCGCAAGATAGGACCTTACTTTCAGGATTTTACTGGCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.