Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   I6L39_RS19155 Genome accession   NZ_CP077395
Coordinates   4137714..4138850 (+) Length   378 a.a.
NCBI ID   WP_209792896.1    Uniprot ID   -
Organism   Aeromonas sp. FDAARGOS 1409     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4132714..4143850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L39_RS19130 (I6L39_19130) - 4133167..4134234 (+) 1068 WP_216990536.1 3-deoxy-7-phosphoheptulonate synthase -
  I6L39_RS19135 (I6L39_19135) - 4134591..4135340 (-) 750 WP_216991847.1 ATP-binding cassette domain-containing protein -
  I6L39_RS19140 (I6L39_19140) btuC 4135345..4136349 (-) 1005 WP_209792892.1 vitamin B12 ABC transporter permease BtuC -
  I6L39_RS19145 (I6L39_19145) - 4136426..4137190 (-) 765 WP_216990537.1 ABC transporter substrate-binding protein -
  I6L39_RS19150 (I6L39_19150) - 4137301..4137657 (+) 357 WP_010675200.1 DMT family protein -
  I6L39_RS19155 (I6L39_19155) pilU 4137714..4138850 (+) 1137 WP_209792896.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  I6L39_RS19160 (I6L39_19160) glgC 4139085..4140359 (+) 1275 WP_216990538.1 glucose-1-phosphate adenylyltransferase -
  I6L39_RS19165 (I6L39_19165) - 4140476..4140718 (-) 243 WP_216990539.1 FeoC-like transcriptional regulator -
  I6L39_RS19170 (I6L39_19170) feoB 4140715..4142985 (-) 2271 WP_216990540.1 Fe(2+) transporter permease subunit FeoB -
  I6L39_RS19175 (I6L39_19175) - 4143089..4143316 (-) 228 WP_041213109.1 FeoA family protein -
  I6L39_RS19180 (I6L39_19180) - 4143436..4143765 (+) 330 WP_042078139.1 translation initiation factor -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42139.15 Da        Isoelectric Point: 6.2536

>NTDB_id=581159 I6L39_RS19155 WP_209792896.1 4137714..4138850(+) (pilU) [Aeromonas sp. FDAARGOS 1409]
MELRDMLQILAKQDGSDLYLSTGAPPCAKFNGALRPLTQEPLEPGEVARIADGIMDLEQKQQFEKELEMNLAISLPQTGR
FRVNIFKQRNEVSLVARNIKTEIPRFEDLKLPPVLLDTIMEKRGLVLFVGGTGSGKSTSLAALIDHRNRNSGGHIITIED
PVEFVHRHQKCIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFSETGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLQAFVSQRLVKTTDGGRRAAVEVMLGTHTVRDLIKRGEFGGLKEIMEKSRALGMVTFDSTL
FDLVVEGVIDEEEAVKNADSQNNLRLKIKLWREKGQIGNSAAASGWSLEPTKDEGDLI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=581159 I6L39_RS19155 WP_209792896.1 4137714..4138850(+) (pilU) [Aeromonas sp. FDAARGOS 1409]
ATGGAATTGAGAGACATGCTACAGATCCTGGCCAAGCAGGATGGCTCCGACCTTTATCTCTCGACCGGCGCCCCCCCCTG
CGCCAAGTTCAACGGCGCCCTGCGCCCCCTCACTCAGGAACCGCTCGAACCCGGTGAGGTGGCCCGCATCGCCGACGGCA
TCATGGATCTCGAGCAGAAGCAACAGTTCGAGAAGGAGCTGGAGATGAACCTCGCCATCTCCCTGCCCCAGACAGGCCGT
TTCCGGGTCAACATCTTCAAGCAGCGCAACGAAGTGTCGCTGGTGGCGCGCAACATCAAGACCGAGATCCCCCGCTTCGA
GGATCTCAAGCTCCCTCCGGTGCTGCTCGACACCATCATGGAGAAGCGCGGCCTGGTGCTGTTCGTCGGCGGCACGGGCT
CGGGCAAGTCTACCTCGCTTGCGGCGCTGATCGACCATCGCAACCGCAACAGCGGCGGCCACATCATCACCATCGAGGAT
CCGGTGGAGTTCGTCCATCGCCACCAGAAGTGCATCATCAACCAGCGGGAGGTGGGGGTGGACACCCGCAGCTTCCACGC
GGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTCATCCTGATCGGCGAGATCCGCGATCGGGAGACCATGGAGCATG
CCCTCGCCTTCTCCGAGACCGGGCATCTGGCCATCTCCACCCTGCACGCCAACAACGCCAACCAGGCACTGGATCGCATC
ATCAACTTCTTCCCGGAGGAGCGCAGGCCCCAGCTCCTCAACGATCTTGGCAACAACCTCCAGGCCTTCGTCTCCCAGCG
GCTGGTGAAGACCACGGATGGGGGGCGCCGGGCGGCGGTGGAGGTCATGCTCGGCACCCACACGGTGCGCGATCTCATCA
AGCGTGGCGAGTTTGGCGGCCTCAAGGAGATCATGGAGAAATCCAGGGCCCTTGGCATGGTCACCTTCGACAGCACCCTG
TTCGATCTGGTGGTGGAGGGGGTGATCGACGAGGAGGAGGCGGTGAAGAACGCCGACTCCCAGAACAACCTGCGCCTCAA
GATCAAGCTGTGGCGAGAGAAGGGACAGATAGGCAACAGCGCGGCGGCCAGCGGCTGGAGCCTGGAGCCCACCAAGGACG
AAGGGGATCTCATCTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(113-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

54.4

99.206

0.54
  pilU Acinetobacter baylyi ADP1

52.793

94.709

0.5
  pilU Vibrio cholerae strain A1552

49.858

93.386

0.466
  pilT Vibrio cholerae strain A1552

40.741

92.857

0.378
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

40.741

92.857

0.378
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.888

89.683

0.376
  pilT Legionella pneumophila strain Lp02

42.515

88.36

0.376
  pilT Legionella pneumophila strain ERS1305867

42.515

88.36

0.376
  pilT Pseudomonas aeruginosa PAK

41.279

91.005

0.376
  pilT Pseudomonas stutzeri DSM 10701

40.698

91.005

0.37
  pilT Acinetobacter baumannii strain A118

41.617

88.36

0.368
  pilT Acinetobacter nosocomialis M2

41.617

88.36

0.368
  pilT Acinetobacter baumannii D1279779

41.617

88.36

0.368