Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   KRG72_RS01880 Genome accession   NZ_CP076703
Coordinates   349373..349849 (+) Length   158 a.a.
NCBI ID   WP_074870065.1    Uniprot ID   -
Organism   Streptococcus equinus strain S1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 344373..354849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS01880 (KRG72_01880) comX/sigX 349373..349849 (+) 477 WP_074870065.1 sigma-70 family RNA polymerase sigma factor Regulator
  KRG72_RS01885 (KRG72_01885) - 349880..351238 (-) 1359 WP_074565173.1 aspartate kinase -
  KRG72_RS01890 (KRG72_01890) - 351335..351982 (+) 648 WP_074565172.1 HAD family phosphatase -
  KRG72_RS01895 (KRG72_01895) - 352173..352961 (+) 789 WP_258255621.1 enoyl-CoA hydratase -
  KRG72_RS01900 (KRG72_01900) - 353077..353511 (+) 435 WP_039695988.1 MarR family winged helix-turn-helix transcriptional regulator -
  KRG72_RS01905 (KRG72_01905) - 353514..354488 (+) 975 WP_074870059.1 beta-ketoacyl-ACP synthase III -
  KRG72_RS01910 (KRG72_01910) - 354550..354774 (+) 225 WP_006531079.1 acyl carrier protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 19415.29 Da        Isoelectric Point: 9.6123

>NTDB_id=577447 KRG72_RS01880 WP_074870065.1 349373..349849(+) (comX/sigX) [Streptococcus equinus strain S1]
MDFERYFQTVKPIILKLRRHYFVKLWDYEDWIQEGRIVFFQLLEEHPDLLINEGKRYSYFKTKFSNHVKDTIRHQESFKR
KFNRMPYEEIGDISHCVPQVSFFEVADYVAYQDSLARLRRTLGREDRLKLEKVIRGERFEGKKAFLKSIEPYFSDFRP

Nucleotide


Download         Length: 477 bp        

>NTDB_id=577447 KRG72_RS01880 WP_074870065.1 349373..349849(+) (comX/sigX) [Streptococcus equinus strain S1]
GTGGATTTTGAACGCTATTTTCAAACGGTTAAACCAATTATTTTAAAATTGCGCCGTCATTATTTTGTTAAACTCTGGGA
CTATGAGGATTGGATTCAAGAGGGTAGAATTGTTTTCTTTCAACTCTTAGAGGAGCATCCAGACCTCTTAATTAATGAAG
GCAAACGTTATAGTTACTTTAAAACAAAGTTTTCTAACCATGTTAAAGATACTATCCGCCATCAGGAATCCTTTAAACGG
AAATTTAATCGTATGCCTTATGAAGAAATTGGTGATATTAGTCACTGTGTGCCCCAGGTATCTTTCTTTGAAGTCGCAGA
TTACGTGGCTTATCAGGATAGCTTAGCACGTTTACGAAGAACATTGGGAAGAGAAGACCGACTGAAGTTGGAAAAAGTGA
TTCGTGGGGAACGTTTTGAAGGGAAGAAAGCTTTTTTAAAAAGCATTGAACCGTATTTCTCAGATTTTAGGCCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.