Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   KRG72_RS01605 Genome accession   NZ_CP076703
Coordinates   292538..293014 (+) Length   158 a.a.
NCBI ID   WP_074870065.1    Uniprot ID   -
Organism   Streptococcus equinus strain S1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 287538..298014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS01605 (KRG72_01605) comX/sigX 292538..293014 (+) 477 WP_074870065.1 sigma-70 family RNA polymerase sigma factor Regulator
  KRG72_RS01610 (KRG72_01610) - 293209..293475 (+) 267 WP_021141631.1 ACT domain-containing protein -
  KRG72_RS01615 (KRG72_01615) - 293487..294824 (+) 1338 WP_258255583.1 PFL family protein -
  KRG72_RS01620 (KRG72_01620) - 295054..295758 (+) 705 WP_258255584.1 histidine phosphatase family protein -
  KRG72_RS01625 (KRG72_01625) - 295742..296518 (+) 777 WP_093816024.1 M15 family metallopeptidase -
  KRG72_RS01630 (KRG72_01630) - 296515..297105 (+) 591 WP_258255585.1 glycoside hydrolase family 73 protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 19415.29 Da        Isoelectric Point: 9.6123

>NTDB_id=577443 KRG72_RS01605 WP_074870065.1 292538..293014(+) (comX/sigX) [Streptococcus equinus strain S1]
MDFERYFQTVKPIILKLRRHYFVKLWDYEDWIQEGRIVFFQLLEEHPDLLINEGKRYSYFKTKFSNHVKDTIRHQESFKR
KFNRMPYEEIGDISHCVPQVSFFEVADYVAYQDSLARLRRTLGREDRLKLEKVIRGERFEGKKAFLKSIEPYFSDFRP

Nucleotide


Download         Length: 477 bp        

>NTDB_id=577443 KRG72_RS01605 WP_074870065.1 292538..293014(+) (comX/sigX) [Streptococcus equinus strain S1]
GTGGATTTTGAACGCTATTTTCAAACGGTTAAACCAATTATTTTAAAATTGCGCCGTCATTATTTTGTTAAACTCTGGGA
CTATGAGGATTGGATTCAAGAGGGTAGAATTGTTTTCTTTCAACTCTTAGAGGAGCATCCAGACCTCTTAATTAATGAAG
GCAAACGTTATAGTTACTTTAAAACAAAGTTTTCTAACCATGTTAAAGATACTATCCGCCATCAGGAATCCTTTAAACGG
AAATTTAATCGTATGCCTTATGAAGAAATTGGTGATATTAGTCACTGTGTGCCCCAGGTATCTTTCTTTGAAGTCGCAGA
TTACGTGGCTTATCAGGATAGCTTAGCACGTTTACGAAGAACATTGGGAAGAGAAGACCGACTGAAGTTGGAAAAAGTGA
TTCGTGGGGAACGTTTTGAAGGGAAGAAAGCTTTTTTAAAAAGCATTGAACCGTATTTCTCAGATTTTAGGCCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.