Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   A11S_RS07040 Genome accession   NC_020812
Coordinates   1504359..1505549 (-) Length   396 a.a.
NCBI ID   WP_015467812.1    Uniprot ID   M4VGC9
Organism   Micavibrio aeruginosavorus EPB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1499359..1510549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A11S_RS07020 (A11S_1465) - 1499501..1500265 (-) 765 WP_015467808.1 hypothetical protein -
  A11S_RS07025 (A11S_1466) - 1500279..1501049 (-) 771 WP_015467809.1 hypothetical protein -
  A11S_RS07030 (A11S_1467) - 1501173..1503053 (-) 1881 WP_041802563.1 type II and III secretion system family protein -
  A11S_RS07035 (A11S_1468) - 1503232..1504362 (-) 1131 WP_235067545.1 PilT/PilU family type 4a pilus ATPase -
  A11S_RS07040 (A11S_1469) pilT 1504359..1505549 (-) 1191 WP_015467812.1 type IV pilus twitching motility protein PilT Machinery gene
  A11S_RS07045 (A11S_1470) - 1505679..1506491 (-) 813 WP_015467813.1 A24 family peptidase -
  A11S_RS07050 (A11S_1471) - 1506513..1508087 (-) 1575 WP_015467814.1 tetratricopeptide repeat protein -
  A11S_RS07055 (A11S_1472) - 1508238..1508996 (-) 759 WP_015467815.1 ABC transporter ATP-binding protein -
  A11S_RS07060 (A11S_1473) - 1509026..1509706 (-) 681 WP_235067548.1 hypothetical protein -
  A11S_RS07065 (A11S_1474) - 1509715..1510359 (-) 645 WP_015467817.1 hypothetical protein -

Sequence

Protein


Download         Length: 396 a.a.        Molecular weight: 43413.15 Da        Isoelectric Point: 5.2195

>NTDB_id=57383 A11S_RS07040 WP_015467812.1 1504359..1505549(-) (pilT) [Micavibrio aeruginosavorus EPB]
MDILQLLRFTIQNNASDLHLSPTNPPVIRVNGEMKRIKADPLQSDDIRTMLYSVMNEDQRADFERELELDFAIAYGEKAR
FRVNAFTTRNGTAAVFRSIPSLIPTMEELELPPIIRRFAELEKGLVLVTGPTGSGKSTTLASIINYINENHASHIITVED
PVEFFHASKKAVVNHREIGTDTKSFSKALRSSLREDPDVILVGEMRDYETISLALTAAETGHLVFGTLHSNTAAKTIDRI
IDVFPSGDKEMVRAMLASSLQGVVAQSLLKRADGSGRVGAFEILVGTNAVRNLIRENQIAQLYSMIQTGSRYGMTTLEDS
VNALLEQGVIDKDEARRALLKTTEDEGARDEDSVAASLGGGKMSETMTRKQAAVGRAPGAQPRKPGEDDTGEGYTF

Nucleotide


Download         Length: 1191 bp        

>NTDB_id=57383 A11S_RS07040 WP_015467812.1 1504359..1505549(-) (pilT) [Micavibrio aeruginosavorus EPB]
TTGGATATTCTTCAGCTTTTGCGCTTTACGATTCAGAACAATGCGTCTGACTTGCACTTGAGTCCGACCAACCCGCCGGT
TATCCGGGTGAACGGGGAGATGAAGCGGATCAAGGCCGATCCGCTGCAAAGTGATGACATTCGCACCATGCTCTATTCCG
TGATGAACGAGGATCAGCGCGCCGATTTCGAACGCGAGCTGGAGCTGGATTTCGCTATTGCCTACGGTGAAAAGGCTCGT
TTCCGTGTGAACGCCTTTACCACCCGAAACGGCACGGCCGCCGTTTTCCGTTCCATTCCGTCATTGATTCCGACGATGGA
AGAGCTGGAATTGCCGCCGATCATCCGCCGTTTTGCCGAGCTGGAAAAGGGGCTGGTTCTGGTGACCGGTCCGACGGGGT
CGGGTAAATCGACCACGCTGGCCTCGATCATCAACTATATTAACGAAAATCACGCCAGCCACATTATTACGGTCGAAGAC
CCGGTCGAATTTTTCCATGCCTCGAAAAAGGCGGTGGTGAACCATCGTGAAATCGGCACCGATACCAAATCATTCTCCAA
GGCTTTGCGCAGTTCGTTGCGTGAAGACCCGGACGTTATTCTGGTGGGGGAGATGCGGGATTATGAAACGATCTCTCTGG
CTCTGACCGCGGCGGAAACCGGGCACTTGGTGTTTGGTACGCTGCACTCGAACACGGCGGCCAAGACGATTGACCGTATC
ATTGACGTGTTCCCATCGGGGGACAAGGAAATGGTTCGCGCCATGTTGGCCAGTTCGTTGCAGGGCGTTGTGGCCCAATC
GCTGTTGAAACGGGCGGATGGATCGGGCCGGGTCGGCGCGTTTGAAATTCTGGTTGGTACCAACGCTGTGCGAAACCTGA
TCCGTGAAAACCAGATCGCCCAGCTTTATTCCATGATCCAGACCGGATCGCGTTACGGGATGACCACGTTGGAAGATTCT
GTGAACGCTTTGCTGGAGCAGGGTGTGATTGACAAGGACGAGGCGCGCCGCGCCTTGCTGAAAACCACCGAAGACGAAGG
GGCGCGCGATGAAGACAGTGTGGCGGCCTCGTTGGGTGGGGGTAAAATGTCCGAGACCATGACTCGGAAGCAGGCGGCCG
TCGGTCGCGCCCCGGGGGCGCAGCCGCGCAAGCCGGGTGAGGATGATACGGGCGAGGGCTATACATTTTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M4VGC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

59.467

85.354

0.508
  pilT Acinetobacter baumannii D1279779

59.467

85.354

0.508
  pilT Acinetobacter baumannii strain A118

59.467

85.354

0.508
  pilT Acinetobacter baylyi ADP1

57.849

86.869

0.503
  pilT Legionella pneumophila strain ERS1305867

58.529

85.859

0.503
  pilT Legionella pneumophila strain Lp02

58.529

85.859

0.503
  pilT Neisseria gonorrhoeae MS11

58.16

85.101

0.495
  pilT Neisseria meningitidis 8013

58.16

85.101

0.495
  pilT Pseudomonas aeruginosa PAK

57.143

84.848

0.485
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

56.845

84.848

0.482
  pilT Vibrio cholerae strain A1552

56.845

84.848

0.482
  pilT Pseudomonas stutzeri DSM 10701

56.845

84.848

0.482
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.589

92.172

0.457

Multiple sequence alignment