Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SAFDA_RS07545 Genome accession   NZ_AP014942
Coordinates   1553942..1555621 (-) Length   559 a.a.
NCBI ID   WP_042727633.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDA209P     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1548942..1560621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAFDA_RS07525 (SAFDA_1412) - 1549092..1550366 (-) 1275 WP_000406846.1 dihydrolipoamide acetyltransferase family protein -
  SAFDA_RS07530 (SAFDA_1413) - 1550379..1551362 (-) 984 WP_001096642.1 alpha-ketoacid dehydrogenase subunit beta -
  SAFDA_RS07535 (SAFDA_1414) - 1551362..1552354 (-) 993 WP_000568351.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  SAFDA_RS07540 (SAFDA_1415) lpdA 1552370..1553791 (-) 1422 WP_001291538.1 dihydrolipoyl dehydrogenase -
  SAFDA_RS07545 (SAFDA_1416) recN 1553942..1555621 (-) 1680 WP_042727633.1 DNA repair protein RecN Machinery gene
  SAFDA_RS07550 (SAFDA_1417) ahrC 1555637..1556089 (-) 453 WP_001124985.1 transcriptional regulator AhrC/ArgR -
  SAFDA_RS07555 (SAFDA_1418) - 1556521..1557402 (-) 882 WP_000183381.1 polyprenyl synthetase family protein -
  SAFDA_RS07560 (SAFDA_1419) - 1557380..1557610 (-) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  SAFDA_RS07565 (SAFDA_1420) xseA 1557603..1558940 (-) 1338 WP_042727634.1 exodeoxyribonuclease VII large subunit -
  SAFDA_RS07570 (SAFDA_1421) nusB 1558957..1559346 (-) 390 WP_000087385.1 transcription antitermination factor NusB -
  SAFDA_RS07575 (SAFDA_1422) - 1559406..1559768 (-) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64174.78 Da        Isoelectric Point: 4.7913

>NTDB_id=56724 SAFDA_RS07545 WP_042727633.1 1553942..1555621(-) (recN) [Staphylococcus aureus strain FDA209P]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDGDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKKELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRHR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=56724 SAFDA_RS07545 WP_042727633.1 1553942..1555621(-) (recN) [Staphylococcus aureus strain FDA209P]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGGAGATTTTTTATTAGTTAAACGGGAAATTTTTAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAGTCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGAAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTTCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGCATTCAAAACTCTGAAAAATTAAGCTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTATTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGTAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAGCTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCAAAGCAGCGTCGTATAGTCG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGACGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCTAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCTGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATTTCTCACTTGCCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGTGAAAATGCAAGAGAAATGATACAACACAATCAAAGACATAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.409

100

0.442

Multiple sequence alignment