Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   KCV09_RS13380 Genome accession   NZ_CP073241
Coordinates   2921380..2921817 (+) Length   145 a.a.
NCBI ID   WP_212515269.1    Uniprot ID   -
Organism   Acinetobacter soli strain M3-1-68     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2916380..2926817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV09_RS13370 - 2916835..2919624 (-) 2790 WP_212515268.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  KCV09_RS13375 - 2919686..2920555 (-) 870 WP_228301561.1 carbon-nitrogen hydrolase family protein -
  KCV09_RS13380 pilA2 2921380..2921817 (+) 438 WP_212515269.1 pilin Machinery gene
  KCV09_RS13385 bfr 2922080..2922544 (-) 465 WP_004934272.1 bacterioferritin -
  KCV09_RS13390 - 2922794..2922988 (-) 195 WP_004934275.1 bacterioferritin-associated ferredoxin -
  KCV09_RS13395 - 2923141..2923524 (-) 384 WP_004934278.1 RidA family protein -
  KCV09_RS13400 - 2923600..2925714 (-) 2115 WP_004934280.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  KCV09_RS13405 rpoZ 2926104..2926385 (-) 282 WP_004934284.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 14703.81 Da        Isoelectric Point: 7.5894

>NTDB_id=558415 KCV09_RS13380 WP_212515269.1 2921380..2921817(+) (pilA2) [Acinetobacter soli strain M3-1-68]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYTIRARVSEALTTLGPLKSSVSENIISNNITNLEATGDPACAGVSTVT
ATSNVASGGCEKGAVKVTTTAKAGAVTLTLTPTVTVTNNAVANVKWACTSDNDKYAPASCRAGAN

Nucleotide


Download         Length: 438 bp        

>NTDB_id=558415 KCV09_RS13380 WP_212515269.1 2921380..2921817(+) (pilA2) [Acinetobacter soli strain M3-1-68]
ATGAATGCACAAAAAGGTTTTACCTTAATTGAATTGATGATCGTGGTGGCGATTATTGGTATTTTGGCGGCGATTGCGAT
TCCTGCTTATCAGGATTATACCATTAGAGCGCGAGTGTCAGAAGCATTGACTACATTAGGTCCTTTGAAAAGTTCAGTGA
GTGAAAATATTATTTCAAATAATATTACAAACTTAGAAGCGACTGGTGATCCTGCATGCGCAGGAGTTTCCACAGTCACA
GCAACCTCAAATGTTGCATCTGGTGGTTGTGAAAAAGGGGCTGTTAAAGTGACAACTACAGCAAAAGCTGGCGCAGTAAC
TTTGACCTTAACACCAACGGTTACAGTCACTAACAATGCTGTTGCAAATGTAAAATGGGCTTGTACATCAGATAATGATA
AGTATGCACCAGCTTCATGTCGTGCAGGCGCTAATTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-141)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

56.028

97.241

0.545
  comP Acinetobacter baylyi ADP1

51.656

100

0.538
  pilA2 Legionella pneumophila strain ERS1305867

55.319

97.241

0.538
  pilA Ralstonia pseudosolanacearum GMI1000

44.242

100

0.503
  pilA Pseudomonas aeruginosa PAK

39.873

100

0.434
  pilA/pilA1 Eikenella corrodens VA1

37.267

100

0.414
  pilE Neisseria gonorrhoeae strain FA1090

35.928

100

0.414
  pilA/pilAI Pseudomonas stutzeri DSM 10701

42.754

95.172

0.407
  pilA Acinetobacter baumannii strain A118

38.514

100

0.393
  pilA/pilAII Pseudomonas stutzeri DSM 10701

39.416

94.483

0.372
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

35.099

100

0.366
  pilA Vibrio cholerae C6706

35.099

100

0.366
  pilA Vibrio cholerae strain A1552

35.099

100

0.366