NTDB

Overview

Name	pilA2	Type	Machinery gene
Locus tag	KCG55_RS02015	Genome accession	NZ_CP073117
Coordinates	419997..420449 (+)	Length	150 a.a.
NCBI ID	WP_254323242.1	Uniprot ID	-
Organism	Neisseria subflava strain HP0015
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 414997..425449

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KCG55_RS02000 (KCG55_02010)	-	415461..415901 (+)	441	WP_254323240.1	TIGR01244 family sulfur transferase	-
KCG55_RS02005 (KCG55_02015)	-	416329..416625 (+)	297	WP_003684318.1	helix-turn-helix transcriptional regulator	-
KCG55_RS02010 (KCG55_02020)	glnD	416645..419203 (+)	2559	WP_254323241.1	[protein-PII] uridylyltransferase	-
KCG55_RS02015 (KCG55_02025)	pilA2	419997..420449 (+)	453	WP_254323242.1	pilin	Machinery gene
KCG55_RS10565 (KCG55_02030)	-	420544..421017 (+)	474	WP_283255525.1	pilin	-
KCG55_RS02030 (KCG55_02035)	-	421439..421921 (+)	483	WP_003684427.1	Lrp/AsnC family transcriptional regulator	-
KCG55_RS02035 (KCG55_02040)	-	422039..422635 (+)	597	WP_254323243.1	DUF1415 domain-containing protein	-
KCG55_RS02040 (KCG55_02045)	-	422650..423009 (+)	360	WP_063076686.1	YbaN family protein	-
KCG55_RS02045 (KCG55_02050)	-	423455..424873 (+)	1419	WP_254323244.1	sodium:proton antiporter	-

Sequence

Protein

Download Length: 150 a.a. Molecular weight: 15721.14 Da Isoelectric Point: 7.8144

                                >NTDB_id=558104 KCG55_RS02015 WP_254323242.1 419997..420449(+) (pilA2) [Neisseria subflava strain HP0015]

MKAIQKGFTLIELMIVIAILGILAVIALPAYQDYTIRAKVSEGLSLAEPAKLAVAETATALNGLTSVKGINGTDKGNTGY

EFPENGSEYVKSITIANGGVITVTSKNTGADANKDPVFTLTPSQANAEAPIKWVCKFSVGEPKHVPANCR

Nucleotide

Download Length: 453 bp

                                >NTDB_id=558104 KCG55_RS02015 WP_254323242.1 419997..420449(+) (pilA2) [Neisseria subflava strain HP0015]

ATGAAAGCAATCCAAAAAGGTTTCACCCTGATCGAATTGATGATCGTCATCGCCATCTTGGGCATTTTGGCCGTAATCGC

TCTGCCTGCATACCAAGACTACACCATCCGCGCTAAAGTATCTGAAGGCTTGAGCTTGGCCGAACCTGCAAAATTGGCAG

TAGCAGAAACTGCTACTGCTTTAAATGGTTTGACCTCAGTTAAAGGTATCAATGGTACTGACAAGGGTAATACGGGTTAC

GAGTTTCCTGAAAATGGTAGTGAATATGTAAAATCTATTACTATTGCAAATGGTGGTGTAATTACAGTAACAAGTAAAAA

TACTGGTGCAGATGCAAATAAAGATCCTGTATTTACTTTAACCCCTTCTCAAGCAAATGCTGAGGCACCTATTAAATGGG

TATGTAAATTTTCTGTTGGCGAGCCTAAACATGTTCCTGCCAACTGCCGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)

Pilin (bacterial filament) (Pilin)

(37-150)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA2	Legionella pneumophila strain ERS1305867	48.98	98	0.48
pilA2	Legionella pneumophila str. Paris	48.98	98	0.48
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	37.766	100	0.473
pilE	Neisseria gonorrhoeae MS11	36.957	100	0.453
pilA	Ralstonia pseudosolanacearum GMI1000	39.535	100	0.453
comP	Acinetobacter baylyi ADP1	44.079	100	0.447
pilE	Neisseria gonorrhoeae strain FA1090	38.953	100	0.447
pilA/pilA1	Eikenella corrodens VA1	37.427	100	0.427
pilA	Pseudomonas aeruginosa PAK	38.608	100	0.407
pilA	Haemophilus influenzae 86-028NP	38.312	100	0.393
pilA/pilAI	Pseudomonas stutzeri DSM 10701	39.333	100	0.393
pilA	Glaesserella parasuis strain SC1401	35.404	100	0.38
pilA	Haemophilus influenzae Rd KW20	36.913	99.333	0.367

Detailed information NTG0558104