Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KBV71_RS02920 Genome accession   NZ_CP072990
Coordinates   686174..686611 (+) Length   145 a.a.
NCBI ID   WP_242786517.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. translucens strain CIX95     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 685013..685978 686174..686611 flank 196


Gene organization within MGE regions


Location: 685013..686611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBV71_RS02915 (KBV71_02875) - 685013..685978 (+) 966 WP_065898826.1 IS1595 family transposase -
  KBV71_RS02920 (KBV71_02880) pilA 686174..686611 (+) 438 WP_242786517.1 pilin Machinery gene

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 14717.97 Da        Isoelectric Point: 8.4830

>NTDB_id=557179 KBV71_RS02920 WP_242786517.1 686174..686611(+) (pilA) [Xanthomonas translucens pv. translucens strain CIX95]
MKKQQGFTLIELMIVIAIIAILAAIALPAYQNYVVKARVSEALVAADGVKPVVSENAAAGEAFNKNWTAPTTATPNVSAV
AIDGATGAITVTTTSKAGNGNVILTPTSAGAALAVGTPPSESIVWTCTSTIDAKYLPANCTSNKK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=557179 KBV71_RS02920 WP_242786517.1 686174..686611(+) (pilA) [Xanthomonas translucens pv. translucens strain CIX95]
ATGAAGAAGCAACAGGGCTTTACCCTGATCGAACTGATGATCGTAATTGCGATCATCGCCATCCTGGCCGCTATCGCGCT
GCCGGCTTACCAGAACTATGTGGTCAAGGCTCGCGTTAGCGAAGCATTAGTGGCGGCAGATGGCGTCAAGCCTGTAGTGA
GCGAAAATGCTGCTGCTGGGGAGGCATTCAATAAGAATTGGACTGCTCCTACTACCGCTACGCCGAACGTTTCGGCTGTT
GCGATTGATGGCGCTACTGGCGCGATTACTGTTACTACGACCAGCAAGGCTGGTAACGGCAATGTTATTCTTACCCCTAC
TTCAGCAGGGGCAGCTCTTGCAGTTGGTACACCTCCCAGTGAGAGCATCGTTTGGACTTGCACCAGTACGATTGATGCTA
AGTACCTGCCCGCTAATTGCACTAGTAATAAGAAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

46.835

100

0.51
  comP Acinetobacter baylyi ADP1

46.154

100

0.497
  pilA2 Legionella pneumophila strain ERS1305867

49.306

99.31

0.49
  pilA2 Legionella pneumophila str. Paris

48.611

99.31

0.483
  pilE Neisseria gonorrhoeae strain FA1090

36.364

100

0.414
  pilA Haemophilus influenzae 86-028NP

41.958

98.621

0.414
  pilA Haemophilus influenzae Rd KW20

41.259

98.621

0.407
  pilA Acinetobacter baumannii strain A118

38.667

100

0.4
  pilA/pilA1 Eikenella corrodens VA1

34.132

100

0.393
  pilE Neisseria gonorrhoeae MS11

34.568

100

0.386
  pilA Pseudomonas aeruginosa PAK

36.129

100

0.386
  pilA/pilAII Pseudomonas stutzeri DSM 10701

37.931

100

0.379
  pilH Neisseria gonorrhoeae MS11

30.857

100

0.372
  pilA/pilAI Pseudomonas stutzeri DSM 10701

36.552

100

0.366