Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   J7U00_RS09090 Genome accession   NZ_CP072431
Coordinates   1748559..1749056 (-) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   A0A0M4HKA9
Organism   Streptococcus thermophilus strain S24745     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1743559..1754056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U00_RS09070 (J7U00_09050) - 1743605..1745209 (-) 1605 WP_002949230.1 CTP synthase -
  J7U00_RS09075 (J7U00_09055) rpoE 1745460..1746035 (-) 576 WP_207567726.1 DNA-directed RNA polymerase subunit delta -
  J7U00_RS09080 (J7U00_09060) tig 1746193..1747476 (-) 1284 WP_011680653.1 trigger factor -
  J7U00_RS09085 (J7U00_09065) - 1747617..1748459 (+) 843 WP_011225338.1 mechanosensitive ion channel family protein -
  J7U00_RS09090 (J7U00_09070) comX 1748559..1749056 (-) 498 WP_002949220.1 sigma factor Regulator
  J7U00_RS09095 (J7U00_09075) - 1749348..1749452 (-) 105 Protein_1786 IS200/IS605 family transposase -
  J7U00_RS09100 (J7U00_09080) - 1749810..1750274 (+) 465 Protein_1787 transposase family protein -
  J7U00_RS09105 (J7U00_09085) - 1750532..1751722 (-) 1191 WP_011680651.1 cyclopropane-fatty-acyl-phospholipid synthase family protein -
  J7U00_RS09110 (J7U00_09090) - 1751804..1752130 (-) 327 WP_014607875.1 M20/M25/M40 family metallo-hydrolase -
  J7U00_RS09115 (J7U00_09095) - 1752319..1752641 (+) 323 Protein_1790 transposase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=552775 J7U00_RS09090 WP_002949220.1 1748559..1749056(-) (comX) [Streptococcus thermophilus strain S24745]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=552775 J7U00_RS09090 WP_002949220.1 1748559..1749056(-) (comX) [Streptococcus thermophilus strain S24745]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCTTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGCTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCTTTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.