Detailed information
Bioinformatically predicted
Overview
| Name | pilV | Type | Machinery gene |
| Locus tag | JZM60_RS12295 | Genome accession | NZ_CP071382 |
| Coordinates | 2680885..2681112 (+) | Length | 75 a.a. |
| NCBI ID | WP_207162740.1 | Uniprot ID | - |
| Organism | Geobacter benzoatilyticus strain Jerry-YX | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2675885..2686112
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JZM60_RS12280 (JZM60_12280) | - | 2676370..2677587 (+) | 1218 | WP_207162737.1 | type II secretion system F family protein | - |
| JZM60_RS12285 (JZM60_12285) | - | 2677597..2679240 (+) | 1644 | WP_207162738.1 | two-component system sensor histidine kinase NtrB | - |
| JZM60_RS12290 (JZM60_12290) | - | 2679291..2680667 (+) | 1377 | WP_207162739.1 | sigma-54-dependent transcriptional regulator | - |
| JZM60_RS12295 (JZM60_12295) | pilV | 2680885..2681112 (+) | 228 | WP_207162740.1 | type IV pilin protein | Machinery gene |
| JZM60_RS12300 (JZM60_12300) | - | 2681155..2681547 (+) | 393 | WP_207162741.1 | hypothetical protein | - |
| JZM60_RS12305 (JZM60_12305) | - | 2681650..2683380 (+) | 1731 | WP_207162742.1 | tetratricopeptide repeat protein | - |
| JZM60_RS12310 (JZM60_12310) | - | 2683383..2684174 (+) | 792 | WP_207162743.1 | ABC transporter permease | - |
| JZM60_RS12315 (JZM60_12315) | - | 2684183..2685049 (+) | 867 | WP_207162744.1 | hypothetical protein | - |
| JZM60_RS12320 (JZM60_12320) | - | 2685050..2685964 (+) | 915 | WP_207162745.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 75 a.a. Molecular weight: 7913.19 Da Isoelectric Point: 9.9177
>NTDB_id=545127 JZM60_RS12295 WP_207162740.1 2680885..2681112(+) (pilV) [Geobacter benzoatilyticus strain Jerry-YX]
MLQKLRNKKGFTLIELLIVVAIIGILAAIAIPQFSAYQAKAKNSASNSDTKNLKTGMEAYGADNAGAYPGALSQE
MLQKLRNKKGFTLIELLIVVAIIGILAAIAIPQFSAYQAKAKNSASNSDTKNLKTGMEAYGADNAGAYPGALSQE
Nucleotide
Download Length: 228 bp
>NTDB_id=545127 JZM60_RS12295 WP_207162740.1 2680885..2681112(+) (pilV) [Geobacter benzoatilyticus strain Jerry-YX]
ATGTTACAGAAACTCAGGAACAAGAAAGGCTTCACCCTCATCGAACTGCTGATCGTCGTTGCGATCATCGGTATCCTCGC
AGCGATTGCGATTCCGCAGTTCTCGGCTTATCAGGCCAAGGCAAAAAACAGTGCCTCGAACTCGGATACCAAGAACCTCA
AGACTGGTATGGAAGCGTATGGGGCCGACAATGCAGGCGCGTACCCAGGTGCTTTGTCTCAGGAATAA
ATGTTACAGAAACTCAGGAACAAGAAAGGCTTCACCCTCATCGAACTGCTGATCGTCGTTGCGATCATCGGTATCCTCGC
AGCGATTGCGATTCCGCAGTTCTCGGCTTATCAGGCCAAGGCAAAAAACAGTGCCTCGAACTCGGATACCAAGAACCTCA
AGACTGGTATGGAAGCGTATGGGGCCGACAATGCAGGCGCGTACCCAGGTGCTTTGTCTCAGGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
55.714 |
93.333 |
0.52 |
| pilV | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
56.25 |
85.333 |
0.48 |
| pilA/pilA1 | Eikenella corrodens VA1 |
50.704 |
94.667 |
0.48 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
50 |
88 |
0.44 |
| pilA | Vibrio cholerae strain A1552 |
50 |
88 |
0.44 |
| pilA | Vibrio cholerae C6706 |
50 |
88 |
0.44 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
45.833 |
96 |
0.44 |
| comF | Acinetobacter baylyi ADP1 |
39.744 |
100 |
0.413 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
42.254 |
94.667 |
0.4 |
| pilA | Pseudomonas aeruginosa PAK |
55.556 |
72 |
0.4 |
| pilA | Acinetobacter nosocomialis M2 |
62.5 |
64 |
0.4 |
| pilA/pilA1 | Synechocystis sp. PCC 6803 |
47.458 |
78.667 |
0.373 |
| pilA/pilA4 | Thermus thermophilus HB27 |
46.667 |
80 |
0.373 |
| pilA | Haemophilus influenzae Rd KW20 |
67.5 |
53.333 |
0.36 |
| comP | Acinetobacter baylyi ADP1 |
56.25 |
64 |
0.36 |