Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   J0J33_RS03050 Genome accession   NZ_CP071295
Coordinates   607751..608056 (+) Length   101 a.a.
NCBI ID   WP_040087209.1    Uniprot ID   -
Organism   Lactococcus sp. LG1267     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 602751..613056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J33_RS03030 (J0J33_03030) guaB 603861..605342 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  J0J33_RS03035 (J0J33_03035) rpsU 605468..605644 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  J0J33_RS03040 (J0J33_03040) comGA 605830..606774 (+) 945 WP_173816876.1 competence type IV pilus ATPase ComGA Machinery gene
  J0J33_RS03045 (J0J33_03045) comGB/cglB 606713..607732 (+) 1020 WP_256440196.1 competence type IV pilus assembly protein ComGB Machinery gene
  J0J33_RS03050 (J0J33_03050) comYC 607751..608056 (+) 306 WP_040087209.1 competence type IV pilus major pilin ComGC Machinery gene
  J0J33_RS10740 comGD 608031..608447 (+) 417 WP_019293010.1 competence type IV pilus minor pilin ComGD Machinery gene
  J0J33_RS10870 (J0J33_03055) comGE 608479..608712 (+) 234 WP_019293009.1 competence type IV pilus minor pilin ComGE -
  J0J33_RS03060 (J0J33_03060) comGF 608699..609133 (+) 435 WP_242526938.1 competence type IV pilus minor pilin ComGF -
  J0J33_RS03065 (J0J33_03065) - 609365..610210 (+) 846 WP_019336001.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  J0J33_RS03070 (J0J33_03070) - 610281..611165 (-) 885 WP_086582775.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11373.35 Da        Isoelectric Point: 10.2213

>NTDB_id=544709 J0J33_RS03050 WP_040087209.1 607751..608056(+) (comYC) [Lactococcus sp. LG1267]
MKKKRLKAFTLIEMLVVLLIISVLLLLFVPNLAKEKKNIQNTGQTAVVKVVEGQAELYQLDKQDSPNLGKLVSDGLITQK
QADSYNDYYTKNPNAKRNVPN

Nucleotide


Download         Length: 306 bp        

>NTDB_id=544709 J0J33_RS03050 WP_040087209.1 607751..608056(+) (comYC) [Lactococcus sp. LG1267]
ATGAAAAAAAAGAGACTCAAAGCTTTTACTTTGATTGAAATGCTTGTCGTCTTACTTATTATCAGTGTGTTACTTTTATT
GTTTGTCCCAAATTTGGCTAAAGAAAAGAAGAATATCCAAAATACGGGTCAAACAGCGGTTGTTAAGGTTGTCGAAGGTC
AAGCCGAACTTTATCAACTTGATAAACAGGATAGTCCTAACTTAGGGAAGCTTGTCTCCGACGGTTTAATTACGCAAAAA
CAAGCCGATAGCTACAATGATTATTATACCAAGAACCCTAATGCAAAACGTAATGTACCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus mutans UA140

64.356

100

0.644
  comYC Streptococcus mutans UA159

64.356

100

0.644
  comYC Streptococcus gordonii str. Challis substr. CH1

62.745

100

0.634
  comGC/cglC Streptococcus mitis SK321

63.636

98.02

0.624
  comGC Lactococcus lactis subsp. cremoris KW2

62

99.01

0.614
  comGC/cglC Streptococcus pneumoniae D39

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae Rx1

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae R6

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae TIGR4

59.596

98.02

0.584
  comGC/cglC Streptococcus mitis NCTC 12261

62.637

90.099

0.564
  comYC Streptococcus suis isolate S10

56.79

80.198

0.455
  comGC Staphylococcus aureus MW2

50.633

78.218

0.396
  comGC Staphylococcus aureus N315

50.633

78.218

0.396